Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00981 ATGCCAAATTGTCCCGATTGCGACAGTGGATTTGTTGAAGAGATTGAAAATCCTCATGTAAACATAGATGGCCGGCGCCGGAGGTTCCCACCGGCGGCGACCATGTACATGATCGGCCACCGCCATGATCAGAATTCTGGTCCAAATCACAGGAGACATTGCATAAACTCGGGCGGCGGTGACCGTTCACCGTTCAATCCAATCATCATGCTTCGCTCATCAGAAGGAACGAGTCGTGATCGTGGTGGCTTTGAGCTTTTCTATGATGATGGTGTCGGTTCTGGCCTTAGGCCTTTGCCTCCAAGGATGTCAGAGATTCTCTTAGGATCTGGATTTGACAGAGTGATGGAACAAATTTCTAATGTTGAGAACAATGGAGGAGGTATTGGAAGACACGACCAACAACAACCTCCTCCAGCATCAAAAGTCATTGTGGATTCCTTGCCGATAATAAAGATTGATGAGGCCCACATCGCCACGGAATCACATTGTGCCATTTGCAAGGAGACTTTTGAAATTGGAATCACTGCAAGAGAATTGCCTTGCAAACACATATACCACAATGAATGCATCCTCCCCTGGCTTGCGATTCGCAATTCCTGCCCTGTTTGTCGCCATGAATTGCCTTTAGAACCAAACAACAACACATCATCATTAGTTCAGAACCAACAAACAAGTGAGTTGGAGAATGTGGGGTTGACAATTTGGAGGTTACCGGGTGGTGGTTTTGCGGTGGGAAGGTTTTTAGGTGGAAGAAGAAGGGGAGATGATAGGGGGGTTCCTGTTATTTACACAGAGGTATATGGTGGATTTAACATTAATGGGGTTGAGCCAATTAGAAGGATTTCTTGGTCAGTTTCATCATCTAGAGGGAGAAGGAATGGTGGTGGGTTGAGAAGAATGTTTAGCAATATGTTTGGTTGTTTTAGAGGTGATGGAGGAGTTAGGCCTCAACGCTCTGTTTCTCCTATAGCATATTCTCAACCCATGAGATTAAGAAGTAATAGTGTATCTCAGGCCAATGTGGATCCTTCTCCTCGTTCTCGCAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGACCATGGTAA 1092 0.456 MPNCPDCDSGFVEEIENPHVNIDGRRRRFPPAATMYMIGHRHDQNSGPNHRRHCINSGGGDRSPFNPIIMLRSSEGTSRDRGGFELFYDDGVGSGLRPLPPRMSEILLGSGFDRVMEQISNVENNGGGIGRHDQQQPPPASKVIVDSLPIIKIDEAHIATESHCAICKETFEIGITARELPCKHIYHNECILPWLAIRNSCPVCRHELPLEPNNNTSSLVQNQQTSELENVGLTIWRLPGGGFAVGRFLGGRRRGDDRGVPVIYTEVYGGFNINGVEPIRRISWSVSSSRGRRNGGGLRRMFSNMFGCFRGDGGVRPQRSVSPIAYSQPMRLRSNSVSQANVDPSPRSRRTWSMDVNSGMRPW. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00981 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 210 IPR013083 -
Seca7g00981 363 MobiDBLite consensus disorder prediction 333 363 - -
Seca7g00981 363 SUPERFAMILY RING/U-box 144 213 - -
Seca7g00981 363 MobiDBLite consensus disorder prediction 41 67 - -
Seca7g00981 363 FunFam E3 ubiquitin-protein ligase RING1-like 129 211 - -
Seca7g00981 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 94 209 - -
Seca7g00981 363 Pfam Protein of unknown function (DUF1117) 231 319 IPR010543 -
Seca7g00981 363 SMART ring_2 164 204 IPR001841 -
Seca7g00981 363 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
Seca7g00981 363 MobiDBLite consensus disorder prediction 333 355 - -
Seca7g00981 363 Pfam Ring finger domain 163 205 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00981 Seca-Chr7 12593255 12594346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00981 96 214 C3H Transcription Factor Family AT5G01980 39.496 1.77e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00981 K11982 - gmx:100807324 378.252