Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00966 ATGACGGGGTTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAGTGTGCAAGTGATTGTGTTTTTGCTCCTTACTTCTCCTATGACCAGGCTGCAACTCATTTTGCAGCAGTGCATAAGGTTTATGGTGCTAGCAATGTCTCCAGGCTATTGTCACATCTTCCAATTCAGAACAGAAGTGATGCTGCCATCACTATATCTTATGAAGCCTTGGCTCGCATGCAGGATCCTATATATGGTTGTGTTGCTCATATCTATGCATTACAGCAACAGGTTGCCAGCTTGCAAGAGGAGATAGATGTTCTTGGAAGTCTAATGGCAAATTCCACAGTTAGTGCTGTTAACTGTGGCAGTGTACAAGCACCAATGAACTCAAACAATGGAATACAACATCTTTTGCAGCATGATGATGCTACAAGGACTCAATATTATCAAAATCAACTGGCTAATTTTCTTTCACAAGAAGGAAGTGTAACAGCCTACCAAAGTTTTGACTCACAGATGGATGTAGAGCTTCCTAATGCATATGGACTTGAAGAGACTTTATTTGGGGATTCCAACTCCAACCCTTTAGAGAAGTTCCTATCTGGAATTGACCAAGATGTTTTCATGAACCACCCTTGGTTCAAGCATAATGCATAA 648 0.4151 MTGFGSSCGACKFLRRKCASDCVFAPYFSYDQAATHFAAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQQQVASLQEEIDVLGSLMANSTVSAVNCGSVQAPMNSNNGIQHLLQHDDATRTQYYQNQLANFLSQEGSVTAYQSFDSQMDVELPNAYGLEETLFGDSNSNPLEKFLSGIDQDVFMNHPWFKHNA. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00966 215 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 161 - -
Seca7g00966 215 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Seca7g00966 215 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00966 Seca-Chr7 12313216 12314452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00966 1 117 AS2 family AT5G06080 70.940 1.28e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca7g00966 LOB 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00966 K13945 - gmx:100787638 317.39