Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00959 ATGGCGAATCGTTGGTGGGCTGGGAACGTGGCTGTGAGACCTTCGGAGCAAAAGGACCCCAACGCTACCCCAACCAGCAGCAACAGCAACACCAACGTCACTGGCATCGGCGGTGGCGACGACGACGACAACAACGAGCGCGATGCCGACGACACTACCCCTGGCGGAGGACGGCGGCCGCGTGGCCGGCCACCTGGGTCGAAGAACAAGCCGAAGCCGCCGGTGGTGATAACGAAGGAGAGTCCCGACGCGCTTCGGAGCCACATCTTGGAAATCAGCAACGGAAGCGACGTCGCTGAGTGCATCTCCACCTTCGCCAACCGCCGCCACCGCGGCGTGTCGGTGCTAAGCGGCAGCGGCGTCGTAACCAACGTGACTCTCCGGCAACCGGCGGCTCCCGGTGGGGTGATCACCCTACAAGGGAGATTTGAGATTCTGTCCCTCTCCGGCGCGTTTCTGCCGGCGCCGTCACCGCCGGAGGCTACCGGACTGACGGTGTACTTGGCCGGAGGTCAGGGTCAGGTGGTCGGAGGAACAGTTGTGGGGTCATTAGTAGCTTCAGGGCCTGTTATGGTGGTTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGTTACCAATAGATGATGAACAGGGTGAAGAGGACAACAATATGCAAGTGCAGCAACAACAAGAGGTGAATGAAAGTGGTGGTGGTGGTGGTGCAAATCCTCCACCTTCTTCTCAGGGTTTAGGGGAACAACAACAACAACAGGTTTCAATGCCAGTTTACAATTTGAATCCTAATTTGCTACCAAATGGTCAAATGCCACATGATGTGTTTTGGGGTCCTCCTTCTCGCCCTTCTCCACCTTCCTTTTGA 861 0.5714 MANRWWAGNVAVRPSEQKDPNATPTSSNSNTNVTGIGGGDDDDNNERDADDTTPGGGRRPRGRPPGSKNKPKPPVVITKESPDALRSHILEISNGSDVAECISTFANRRHRGVSVLSGSGVVTNVTLRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPEATGLTVYLAGGQGQVVGGTVVGSLVASGPVMVVAATFANATYERLPIDDEQGEEDNNMQVQQQQEVNESGGGGGANPPPSSQGLGEQQQQQVSMPVYNLNPNLLPNGQMPHDVFWGPPSRPSPPSF. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00959 286 ProSiteProfiles PPC domain profile profile. 82 219 IPR005175 -
Seca7g00959 286 MobiDBLite consensus disorder prediction 16 38 - -
Seca7g00959 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 276 IPR014476 GO:0003680
Seca7g00959 286 FunFam AT-hook motif nuclear-localized protein 85 213 - -
Seca7g00959 286 Gene3D - 85 226 - -
Seca7g00959 286 PIRSF ESCAROLA 7 285 IPR014476 GO:0003680
Seca7g00959 286 MobiDBLite consensus disorder prediction 1 82 - -
Seca7g00959 286 CDD DUF296 86 169 IPR005175 -
Seca7g00959 286 MobiDBLite consensus disorder prediction 213 286 - -
Seca7g00959 286 MobiDBLite consensus disorder prediction 216 265 - -
Seca7g00959 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 198 IPR005175 -
Seca7g00959 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00959 Seca-Chr7 12251790 12252713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00959 58 281 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 60.177 1.29e-72 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00959 - - aprc:113874473 286.96