Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00956 ATGTGGATGAAGAAAAAGCAAATCCTGATGTCACACCTTCAAGCACCAGTTGGAGATCATGGCAACAATTACTCATCATGGGAAGAAAGGGCTTTTGCTGAAGATTCTGCTAGGATGCTTGGTGGAAGCATATGGCCTCCAAGATCTTACTCTTGTTCCTTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTCTTGGTGGTCACATGAATATCCATAGAAGAGACAGGGCTAGGCTCAAACAAAATCTAGCCATCGATCATCATCACAAAAATGATTTCAAATCATCATCACTAGCAGCAACTACAATTACAACAAGTAGAATCTCACCTTCTAGACCCTCAATTATCTGGGGTAAGCAGGGGTCTCCAAATTCAGAACAAGAAAAAGTGTTAGTCAATGCAAGAGAGGACAATTTTAATGGCTTGGGTTGTAATAATTATGTTGAAACAAGTTTGTCTGTGGGACTCACTTCCATGTTTGGCCAAAAATCACCAATTGTTGCTTGTGGGGACAAAGCCATCATCACTTGTAAAAGACAAAAGACTACTACTACAGTTTTTCTCAAGCCATGTTCAAATGATCATAGAAGCCTCACTTTCCAACCTAAAGAAATCATAGCTGGACTAATTAACCCTGGAATGGAAGAGTTAGATCTTGAACTCAGGCTAGGGAAACAGCAGAAAGTTAAGTAG 693 0.3997 MWMKKKQILMSHLQAPVGDHGNNYSSWEERAFAEDSARMLGGSIWPPRSYSCSFCKREFRSAQALGGHMNIHRRDRARLKQNLAIDHHHKNDFKSSSLAATTITTSRISPSRPSIIWGKQGSPNSEQEKVLVNAREDNFNGLGCNNYVETSLSVGLTSMFGQKSPIVACGDKAIITCKRQKTTTTVFLKPCSNDHRSLTFQPKEIIAGLINPGMEELDLELRLGKQQKVK. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00956 230 Gene3D Classic Zinc Finger 46 104 - -
Seca7g00956 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Seca7g00956 230 Pfam C2H2-type zinc finger 50 74 - -
Seca7g00956 230 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Seca7g00956 230 SUPERFAMILY beta-beta-alpha zinc fingers 47 77 IPR036236 -
Seca7g00956 230 PANTHER OS07G0101800 PROTEIN 22 226 - -
Seca7g00956 230 SMART c2h2final6 50 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00956 Seca-Chr7 12100762 12101535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00956 22 81 C2H2 Transcription Factor Family AT2G37740 78.333 6.11e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g00956 zf-C2H2_6 1.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00956 - - aprc:113851273 258.455