Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00955 ATGGCTGGGATTTGCTGTGGTGTTGTTGGAGAAGGAGAGACTCCTACTCCTATTGAGCCAAGCTCACGGACTTCCGGTCGCCGGGGTTTGGACCTGCTACCCTTGAAATACTTAGCCGACATGGCGATCCCGCCGCCGGAGAATAGCCGGAAGCGGCAGAAGCTGGATCTGTGTGTATCTCCGGCGCCGGCACGGGAGTGTGAGAACGCGGTTGAAAGTAGCGAACCGAGTCCTGGTACACCGAAGGAAGAACTTGATAAGGAATCAAAGGGAGATGAAGCTGTATCGGTTAATGGAATTTCTGCGTTAAACTCGAGGTTGGAAAATGAGGCTGTTGTTGAAGAGTTTCCAAAGTATGGGGTCACACCGGTTTGTGGGAGGAGGAGGGACATGGAAGATGCTGTTTCGGTTTGTCCATCGTTCTGCAAAGAAAGAGGTGTAGAAAATCAGAACGGGATTCATTTCTTCGGTGTTTACGACGGTCATGGATGCTCACATGTGGCGACTATGTGCAAAGAGAGACTGCATGAGATTGTGAAGGAAGAGATAGAACGAGATAAGGAGAGTTTGGAGTGGAAATCCACGATGGAGCAGAGTTTCGCTCGAATGGATGAGGAGGTACTAAGCTGGAGCCAGAGCAACCAGACCTCAACTTGCAGGTGTGAGCTACAAACTCCTCACTGCGACGCTGTGGGTTCCACCGCCGTCGTCGCCGTCGTCACGCCGAAGAAGATCATCGTCTCAAACTGCGGCGATTCCCGTGCCGTTCTTTGCCGGAACGGCGTCGCCATCCCGCTCTCCTCCGATCATAAGCCTGACCGACCCGATGAGTTGGCTCGGATCCAAGACGCGGGTGGGCGCGTGATCTATTGGGATGGTCCAAGAGTGCTTGGAGTGTTGGCCATGTCCAGAGCCATAGGGGACAATTATCTGAAGCCGTATGTTATTTCGGAACCGGAGGTGACGGTGACAGAACGGAGTGACGAGGATGAGTGTTTGATACTGGCGAGTGATGGACTGTGGGACACTGTTCAAAACGACACCGCATGCAGGGTGGTGCGGATGTGTCTTAACGCAGAGAAGCTGCCGTCGCCGCCGGGGTCTCCGTCGAGTGACGTGGCGGCTGATGGCTCCGACAAGGCGTGCTTCGACGCTTCCATTCTGCTGACGAAGTTGGCGTTGGCGAGGCACAGTTCGGACAATGTGAGCGTCGTGGTGGTAGATTTGAGGAGAGGTCAACGTCAACCACAACAACAACAATATAGATTAATTAATTAA 1278 0.5336 MAGICCGVVGEGETPTPIEPSSRTSGRRGLDLLPLKYLADMAIPPPENSRKRQKLDLCVSPAPARECENAVESSEPSPGTPKEELDKESKGDEAVSVNGISALNSRLENEAVVEEFPKYGVTPVCGRRRDMEDAVSVCPSFCKERGVENQNGIHFFGVYDGHGCSHVATMCKERLHEIVKEEIERDKESLEWKSTMEQSFARMDEEVLSWSQSNQTSTCRCELQTPHCDAVGSTAVVAVVTPKKIIVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELARIQDAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERSDEDECLILASDGLWDTVQNDTACRVVRMCLNAEKLPSPPGSPSSDVAADGSDKACFDASILLTKLALARHSSDNVSVVVVDLRRGQRQPQQQQYRLIN. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00955 425 CDD PP2Cc 118 362 IPR001932 -
Seca7g00955 425 MobiDBLite consensus disorder prediction 9 29 - -
Seca7g00955 425 FunFam Protein phosphatase 2C 37 113 416 - -
Seca7g00955 425 SMART PP2C_4 108 407 IPR001932 -
Seca7g00955 425 PANTHER PROTEIN PHOSPHATASE 86 409 IPR015655 GO:0004722|GO:0006470
Seca7g00955 425 MobiDBLite consensus disorder prediction 66 94 - -
Seca7g00955 425 MobiDBLite consensus disorder prediction 79 93 - -
Seca7g00955 425 ProSitePatterns PPM-type phosphatase domain signature. 155 163 IPR000222 GO:0043169
Seca7g00955 425 Pfam Protein phosphatase 2C 119 369 IPR001932 -
Seca7g00955 425 SUPERFAMILY PP2C-like 116 410 IPR036457 -
Seca7g00955 425 Gene3D - 112 417 IPR036457 -
Seca7g00955 425 ProSiteProfiles PPM-type phosphatase domain profile. 118 409 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00955 Seca-Chr7 12060476 12062193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00955 1 357 PP2C-type Phosphatase Gene Family AT3G11410 61.308 6.51e-148 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00955 K14497 - gmx:100781388 580.867