Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00924 ATGGCTCCTTCTTCAGATATCAATCATCTTTCTCATCCATGTATATATGGGGATTTTAGTCACTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTTAGTAAGCTTTTCAAAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCTCCAGAGGAAAACATGGTTTGGCGCCGTCCATCCAGAGCTTTGGATGATCGTGCTAGAGCTCAGAAGGAAAAAGAGGATCTGGGCCATGCAATGGCACTTTCTTCAGCTGAAGATTTAAAGAGACCAAATGGATATGGTTGGGGGGCAGACCCTGATGAAGATTACACAAAGGGACTTCAGGATAACCTAAAGTCATCTGCACACCCTCCATATGCTCCTGCACCATTTTATCCCAACGAATATAGTTTACCATTGAACAGAAGAATATGTGGTGGATGCAACCAGGAGATAATCTATGGAAATTGTTTGGGATGCATGGATACTTATTTTCATCCAGATTGCTTTCGCTGTCACTCTTGTGGCTACCCCATTACTGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGTTGACCCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAGAGATTAGAGCCTCGGAATATAAAATACTATAGACTGGAAGATGGAAGGAGTTTGTGCTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGATTGTCAGCCTCTATACCATTCCATCAGAGATTATTATGAAGGAATGCAAATGAGAATAGATCAACAAATTCCCATGCTTCTCGTTGAGAGAGAAGCACTTAATGAAGCTATTGTTGGAGAGAAGAATGGTTTCCATCACTTGCCAGAGACAAGGGGTTTATGCCTTTCAGAAGAGCAGACAGTCACTAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTTATAGGCATGAGAACTCAACCTCAAAAGCTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCCAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGGTTGGTTGCGCCTTAAAGGTTACCGCAACCTTAATCCTGAAGTAGAGGAAGGCATCTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTAATGCCAAGTTATCATAACATGCCATCAACATCCACAGCTTCTTCTTCTTCCTCCTCCTCCTCCTCAAAGAAAGGTGCAAAGTCTCACGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTTTTAATGATTCTTCCCCAGCTTATGGTGGTGGCTTCAGAGCAGCTAATGAAGCTGTCAATAAATATGGTCTACGTTGTACCCTTGAGCATATTCGTTTAACTGGCTTTTTCCCAGTGTAG 1518 0.4209 MAPSSDINHLSHPCIYGDFSHSERKSGFMKWLSKLFKGGSNRGRGGRHLHEPPEENMVWRRPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNGYGWGADPDEDYTKGLQDNLKSSAHPPYAPAPFYPNEYSLPLNRRICGGCNQEIIYGNCLGCMDTYFHPDCFRCHSCGYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPRNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSYHNMPSTSTASSSSSSSSSKKGAKSHVENKLGEFFKNQIFNDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGFFPV. 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00924 505 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 167 - -
Seca7g00924 505 CDD LIM_DA1 142 194 - -
Seca7g00924 505 FunFam Protein DA1-related 2 129 195 - -
Seca7g00924 505 MobiDBLite consensus disorder prediction 431 450 - -
Seca7g00924 505 MobiDBLite consensus disorder prediction 431 449 - -
Seca7g00924 505 Pfam Protein DA1 291 500 IPR022087 -
Seca7g00924 505 Pfam LIM domain 142 195 IPR001781 -
Seca7g00924 505 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Seca7g00924 505 Gene3D Cysteine Rich Protein 137 201 - -
Seca7g00924 505 PANTHER PROTEIN DA1-RELATED 2 31 504 IPR045218 -
Seca7g00924 505 SMART lim_4 141 193 IPR001781 -
Seca7g00924 505 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00924 Seca-Chr7 11687048 11692132 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca7g00924 DA1-like 1.6e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00924 - - gmx:100784976 938.332