Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00921 ATGCAATCAGTGGTGGCATCATTTCAAAAAGTTGTTGGGCTTGGAAATGCCACACCTTATATATCATTTGGTATTAAAACCATTTCTAAGCATTTTGGATGTTTGAAACATGCTATATATGATCAACTTCAGTTTACAAGCAAGAGTACCCCTGCACCTAACAATTTTGGTGAAAAATCCCAAAGTGGGCTTCCAAATCATGCTGTAGCTTTGCTAAGGAGATGGCTCTTTGAACACTTCTTACACCCTTATCCTACGGATTCTAAAAAGGATACATTGGCTCAACAAACTGGTCTTTCAAGATGTCAGAGTATTGAGGATGAAAATGATGCTGGGGAGAGTGATGATGAGGGTGTTGACATTGATAACAGTGTTGAAGAGATTCACTTTTCCAATAGCAAGCGCGATCTTTTGATTGAGGTTTCTAATTGGTTCATCAATGCAAGAGTGAGAATCTGGAAGCCCATGGTGGAAGAGATGCACATGCTTGGGGAACAGCAGGCCCAAACAATAGAAGTGAATCAAAAGTTCAGCATGCCTAACATTGGCCCATTTGTTGCATTACACAAGCCCATGTGGAAATCCAGCCCCAACCAACATTAA 603 0.4063 MQSVVASFQKVVGLGNATPYISFGIKTISKHFGCLKHAIYDQLQFTSKSTPAPNNFGEKSQSGLPNHAVALLRRWLFEHFLHPYPTDSKKDTLAQQTGLSRCQSIEDENDAGESDDEGVDIDNSVEEIHFSNSKRDLLIEVSNWFINARVRIWKPMVEEMHMLGEQQAQTIEVNQKFSMPNIGPFVALHKPMWKSSPNQH. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00921 200 CDD homeodomain 59 156 IPR001356 GO:0003677
Seca7g00921 200 MobiDBLite consensus disorder prediction 89 104 - -
Seca7g00921 200 SMART HOX_1 58 159 IPR001356 GO:0003677
Seca7g00921 200 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 164 - -
Seca7g00921 200 SUPERFAMILY Homeodomain-like 61 103 IPR009057 -
Seca7g00921 200 Pfam Homeobox KN domain 75 151 IPR008422 GO:0003677|GO:0006355
Seca7g00921 200 Gene3D - 61 177 - -
Seca7g00921 200 Pfam Associated with HOX 1 39 IPR006563 -
Seca7g00921 200 MobiDBLite consensus disorder prediction 88 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00921 Seca-Chr7 11674790 11679240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00921 1 163 Homeobox Transcription Factor Family AT5G02030 39.409 6.65e-37 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00921 - - adu:107457744 221.861