Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00908 ATGGTGGTTACTGAGGATAAGTTTCATGTTGTGGTTGACATAGACAATAACGGCTGTCACCGGAGCTCCTCCGCCGGCGGCGGAGACGGCACTGAAGGGTGTTCTGACGCCGGCGACCGGTCAGATGAGGAGCAAAGGTCCTCCTCCCAGGATTCTTGTACCGAGATTGTGGGAGAGTGTGAGAAAGAAAGAAGATCCTCTGCATCAGAGTGTTCTGTTGAGGTGGATCTGGATGGTGCAGTCTCTGATGTTAAGGTGCATTTGGCTAAGGTGGAAAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGGACCCCCATTGAGCTGGGATGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAACAATGTGCTGAGGCTTGGTTTAAGATCAAGGGCAACAAGAACTTGTGA 432 0.5046 MVVTEDKFHVVVDIDNNGCHRSSSAGGGDGTEGCSDAGDRSDEEQRSSSQDSCTEIVGECEKERRSSASECSVEVDLDGAVSDVKVHLAKVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKNL. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00908 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 142 IPR013083 -
Seca7g00908 143 SUPERFAMILY RING/U-box 92 140 - -
Seca7g00908 143 Pfam RING-variant domain 95 140 IPR011016 GO:0008270
Seca7g00908 143 MobiDBLite consensus disorder prediction 35 49 - -
Seca7g00908 143 SMART ringv_2 94 142 IPR011016 GO:0008270
Seca7g00908 143 PANTHER ZINC FINGER, RING-CH-TYPE 14 141 - -
Seca7g00908 143 ProSiteProfiles Zinc finger RING-CH-type profile. 87 143 IPR011016 GO:0008270
Seca7g00908 143 MobiDBLite consensus disorder prediction 17 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00908 Seca-Chr7 11231669 11236159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00908 61 141 C3H Transcription Factor Family AT5G05830 69.136 5.01e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00908 - - gmx:100818979 199.904