Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00906 ATGACCGAAGTGGACCGCTCCGCCGAACCAACCGCTCACAATGGCGTCGCCGAAATGGAGATTGTCTCCGGCATCGACGGCGGCGAGGAGCCGGAACTCGCAGGCGCCGATGTTGAGGTGCCTGCGGTCGGTGATGGTTGCGTCGCCGGAAGAGTAAAGGGACCTTGGTCGCCGGAGGAGGACGCAGTGCTGAGCCGATTAGTTGCACAGTTCGGGGCGAGGAATTGGAGCATGATCGCACGGGGAGTGCCAGGGCGGTCAGGCAAGTCGTGCCGTCTCCGATGGTGTAATCAACTAGACCCTTGCGTCAAACGAAAGCCCTTCACTGATGAAGAGGATAGTATCATAGTTTCTGCCCATGCGATCCATGGGAACAAATGGGCAGCAATTGCAAGGCTTCTTCCTGGTAGAACAGATAATGCTATCAAGAATCACTGGAATTCTACACTGAAGCGCAGGTGTATGGAACTGGGAAGATATGTCCCAGCAAATGCTGATGTGATGGAAGATGGTAGCTTTGAGAAAACAAAGGCTTCCTCTGAAGAAACCATGTCAGTTGGAGATATCAATTCATTGAATCCTACAGAAGTCAGAAATGTGATGCATAATGAAGTTAAACAGTATGAAAATAAACCTCCAAATAAAGATGGTGCTGAAGTGGAGGAACATCCTACCCTTTGTCGACCAATAGCACGTGTAAGTGCATTTAGTGTTTATAATCCTCTGGGCAAGCCAACAACTGGATATTGTTCAAAGCTTTTCTCGAGGCAGACCCCTTTGATGCAAACCCCCAAACCACTCGTAGGAGCCTGCAAGTTATTGGATGATATTGGATGTGAGCCCATGGTTCCATTGCACTGTGGTCATGGCTGCTGTGCGGCAGAATTGAGGGAAAGCCATTCTCATGGTTCAATATTAGGTCCTGAGTTTGTTGACTATTTGGAGCCTCCCTCTTTCTCAAGTCATGAATTGATTTCTATAGCTACAGACTTGAACAATATGGCTTGGATCAAGAGTGGCCTTGAGAATTATGGTGCCGGAGTAACTGAGAATACTGCAAACTTGACAGCATCCCAAGGGGCTGCAACTGCCTCATAA 1098 0.4882 MTEVDRSAEPTAHNGVAEMEIVSGIDGGEEPELAGADVEVPAVGDGCVAGRVKGPWSPEEDAVLSRLVAQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPCVKRKPFTDEEDSIIVSAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMELGRYVPANADVMEDGSFEKTKASSEETMSVGDINSLNPTEVRNVMHNEVKQYENKPPNKDGAEVEEHPTLCRPIARVSAFSVYNPLGKPTTGYCSKLFSRQTPLMQTPKPLVGACKLLDDIGCEPMVPLHCGHGCCAAELRESHSHGSILGPEFVDYLEPPSFSSHELISIATDLNNMAWIKSGLENYGAGVTENTANLTASQGAATAS. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00906 365 PANTHER MYB PROTEIN-RELATED 53 202 - -
Seca7g00906 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 154 IPR017930 -
Seca7g00906 365 CDD SANT 55 97 IPR001005 -
Seca7g00906 365 SMART sant 52 101 IPR001005 -
Seca7g00906 365 SMART sant 104 152 IPR001005 -
Seca7g00906 365 ProSiteProfiles Myb-like domain profile. 100 150 IPR001005 -
Seca7g00906 365 FunFam MYB transcription factor 53 104 - -
Seca7g00906 365 CDD SANT 107 150 IPR001005 -
Seca7g00906 365 SUPERFAMILY Homeodomain-like 50 146 IPR009057 -
Seca7g00906 365 Pfam Myb-like DNA-binding domain 105 149 IPR001005 -
Seca7g00906 365 Pfam Myb-like DNA-binding domain 53 99 IPR001005 -
Seca7g00906 365 Gene3D - 52 104 - -
Seca7g00906 365 Gene3D - 106 182 - -
Seca7g00906 365 ProSiteProfiles Myb-like domain profile. 53 99 IPR001005 -
Seca7g00906 365 FunFam Transcription factor MYB44 107 153 - -
Seca7g00906 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 99 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00906 Seca-Chr7 11219631 11224596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00906 48 343 MYB Transcription Factor Family AT3G55730 51.768 8.76e-101 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g00906 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00906 K09422 - gmx:100781228 562.762