Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca7g00892 | ATGTCTTTTATTGGCACCCAACAAAAGTGCAAGGCTTGTGACAAAACGGTCTATCCAGTTGATCAGCTATCTGCTGATGGTGTTGCTTACCATAAAGCTTGTTTCAAGTGCTCTCACTGCAAAGGAACGTTAAAGTTGAGCAACTATTCCTCGATGGAAGGTGTTCTTTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAAACAGGCACTTTCAAGAAGAATTTCCAGTCACGTATGTCTTATTCTGTTTTCTTTTTCTTGTTCTTCCAAACAAGGTCCCCTAGTAAAGCTGCTAGTATGTTTTCCGGGACACAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCATTGGAGAAGGTAACAGTGGAAGGTCAGGCATATCACAAATCATGTTTCAAATGTTCACATGGTGGCTGTCCCATAACGCCATCGAATTATGCAGCCCTTGAGGGCGTTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGCAGCTATAATCATCTCATCAAGTCTGCATCAATGAAAAGGGCAGCAACCTCTGTTCAACAATCTTGA | 573 | 0.4206 | MSFIGTQQKCKACDKTVYPVDQLSADGVAYHKACFKCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGTFKKNFQSRMSYSVFFFLFFQTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKSASMKRAATSVQQS. | 191 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca7g00892 | 190 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Seca7g00892 | 190 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Seca7g00892 | 190 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 135 | 174 | - | - | |
| Seca7g00892 | 190 | FunFam | LIM domain and actin-binding 1 | 103 | 173 | - | - | |
| Seca7g00892 | 190 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Seca7g00892 | 190 | Gene3D | Cysteine Rich Protein | 103 | 173 | - | - | |
| Seca7g00892 | 190 | PANTHER | OS06G0237300 PROTEIN | 5 | 78 | - | - | |
| Seca7g00892 | 190 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Seca7g00892 | 190 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Seca7g00892 | 190 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Seca7g00892 | 190 | ProSiteProfiles | LIM domain profile. | 107 | 167 | IPR001781 | - | |
| Seca7g00892 | 190 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 101 | 134 | - | - | |
| Seca7g00892 | 190 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Seca7g00892 | 190 | CDD | LIM2_SF3 | 109 | 169 | - | - | |
| Seca7g00892 | 190 | SMART | lim_4 | 108 | 160 | IPR001781 | - | |
| Seca7g00892 | 190 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Seca7g00892 | 190 | Pfam | LIM domain | 109 | 164 | IPR001781 | - | |
| Seca7g00892 | 190 | Pfam | LIM domain | 10 | 65 | IPR001781 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca7g00892 | Seca-Chr7 | 10928103 | 10930042 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Seca7g00892 | LIM | 2.3e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca7g00892 | K09377 | - | gmx:100807765 | 350.132 |