Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00871 ATGTCGAAGAAGAAGTCTAGTTTAGGTCGCCAAAAGATCCCAATTGAGAAAATACCCAAAAAAAGTCATCTTCAAGTTACATTCTCAAAGCGTCGTTCAGGACTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGTAGAGATCGCAATTGTTGTTTTCTCCCCTGCTGATAAGGCATTCTCTTTTGGCCATCCAGAAGTTGAGTCCATCATTGATCGTTATTTGACTCGAAACCCTCCACAAGAGTCTAGTGCTCACCAAATTGTTGAGGCACATAGAAATGCTAATGTGCGTGATCTCAACATGCAGCTGACTCAGCTTCTTAGCCATTTGGAGGTTGAAAAGAAACAAGGAGAAGAGTTAGACCATGTGAGGAGAGCAAGGCAAAGGCAATTTTGGTGGGAGAGCCCAGTTGATGAGCTTGGCTTGAATGAATTGCTACAATTAAAGGCTTCTATTGAGGACTTGAAAAAGAATTTAGGAAAATTTGCCAGCAAATTCATGATGGAGCAATCAACCATATCTTCAACAAATGTTATTGGGGCTAATGGAATTGGACGTTTTGATGCCTTTGAGAACAAATCTGGTGGTGGTGCTAGGATTAACATTTCTTCCACAGCTCCTAATTCTTATAATTATCTTAGTTTTCGACATGGCCATGGGTATCTTTGA 678 0.4086 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIIDRYLTRNPPQESSAHQIVEAHRNANVRDLNMQLTQLLSHLEVEKKQGEELDHVRRARQRQFWWESPVDELGLNELLQLKASIEDLKKNLGKFASKFMMEQSTISSTNVIGANGIGRFDAFENKSGGGARINISSTAPNSYNYLSFRHGHGYL. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00871 225 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Seca7g00871 225 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca7g00871 225 PANTHER MADS BOX PROTEIN 10 163 - -
Seca7g00871 225 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Seca7g00871 225 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca7g00871 225 Gene3D - 89 183 - -
Seca7g00871 225 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca7g00871 225 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca7g00871 225 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca7g00871 225 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Seca7g00871 225 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Seca7g00871 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00871 Seca-Chr7 10672116 10672793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00871 5 170 Type I MADS-box Gene Family AT5G60440 55.621 6.22e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca7g00871 SRF-TF 3.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00871 - - lja:Lj0g3v0067779.1 335.109