Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00866 ATGGATGAGAGTATGTCAGGCTTTTGTATTAGATCTGGAAGTGTCCGTAGTAAAAGTGGCAGCACTGGCACTAAGTGTGGGCGTTGGAATCCCACAACTGAACAAGTTAAACTTCTCACTGAACTCTTCAGGTCAGGGCTCCGCACCCCAAGCACTGATCAGATTCAAAAGATCTCCACTCAGCTCAGCTTTTATGGTAAGATAGAGAGCAAGAATGTCTTCTATTGGTTTCAGAATCATAAGGCCAGGGAAAGACAAAAGCGTCGTAAGGTTTCCTTTGATGACAAAGATGTCATTCATAGAGATAACTCTAACTCTATCAATGCTTCTCCACAAACAGGTTTTGCTGAGATGTATCAAGTTTCAGAGCCTGACAGGGTGATTGAGACTCTTCAACTCTTTCCCTTGAACTCCTTTGGTGAATCAGAAACAGAGAAGGTGAGGGTGCATGCAAGTGAATGCAGGGATAATACAATGTTTTCATACACAATGGGAGAACAAATGGAACACCCTCCATTAGACTTGCGCTTGAGCTTTTTGTAA 543 0.4273 MDESMSGFCIRSGSVRSKSGSTGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDKDVIHRDNSNSINASPQTGFAEMYQVSEPDRVIETLQLFPLNSFGESETEKVRVHASECRDNTMFSYTMGEQMEHPPLDLRLSFL. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00866 180 MobiDBLite consensus disorder prediction 1 26 - -
Seca7g00866 180 SMART HOX_1 24 91 IPR001356 GO:0003677
Seca7g00866 180 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Seca7g00866 180 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Seca7g00866 180 FunFam WUSCHEL-related homeobox 11 25 93 - -
Seca7g00866 180 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 16 110 IPR044555 GO:0003700|GO:0099402
Seca7g00866 180 CDD homeodomain 28 88 IPR001356 GO:0003677
Seca7g00866 180 MobiDBLite consensus disorder prediction 10 26 - -
Seca7g00866 180 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Seca7g00866 180 Gene3D - 25 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00866 Seca-Chr7 10521375 10522575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00866 8 180 Wox Gene Family AT3G11260 54.974 3.71e-62 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca7g00866 Homeodomain 5.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00866 - - pvu:PHAVU_008G226100g 295.819