Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00856 ATGGCTTCCAGTTTCCGTGACCGCACGTCGGAGTTCCGGTCACTGTCGGAGACTCTGAAGAAGATTGGGGGTGGCACGCCGCCGCCACCGCCGCCGAATCAACCGGAGAATGCTCCGTCCACGTCGCAAGGGTCCTATTCCAGATCCGAATTCAACCGGAAGGCCTCACGAATCGGGTTGGGCATCTTCGAAACCTCACAGAAGATCGCGAGGCTCGCTCAGTTGGCGAAGAAATCGTCCATGTTTAATGATCCAATTATGGAAATACAAGAATTGACTGCTTTGATTAAGAATGACATAACGACGTTGAATTCGGCTCTTTCGGATTTGCAAACGATTCAGAAAATGGATATAGCTGATGGAAATTACTCAGAGGATAGGGTTGTGCATTCAACTGCTGTTTGTGATGACTTAAAGGGTAGGCTCATGGGGGCCACAAAGCACCTTCAAGATGTCTTGACTACTAGGACAGAGAATATCAAGGCTCATGAGAATAGGAAGCAGATATTTTCCAAGACTGTATCAAGAGAGAACCCTTTCCAGCAGCAGCCAAAGCCGGCCACTGAGCCGCCACCTTGGTCAAATTCAGCGAATGCATCAGAGAATTTGCAACAGACATCACCATTACCATCAAATGGAGTTCCAGCTGGCAATCAACTAAGGTTTGTTTAA 672 0.4807 MASSFRDRTSEFRSLSETLKKIGGGTPPPPPPNQPENAPSTSQGSYSRSEFNRKASRIGLGIFETSQKIARLAQLAKKSSMFNDPIMEIQELTALIKNDITTLNSALSDLQTIQKMDIADGNYSEDRVVHSTAVCDDLKGRLMGATKHLQDVLTTRTENIKAHENRKQIFSKTVSRENPFQQQPKPATEPPPWSNSANASENLQQTSPLPSNGVPAGNQLRFV. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00856 223 SUPERFAMILY t-snare proteins 47 171 IPR010989 GO:0016020|GO:0016192
Seca7g00856 223 MobiDBLite consensus disorder prediction 1 50 - -
Seca7g00856 223 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 3 21 IPR021538 -
Seca7g00856 223 MobiDBLite consensus disorder prediction 192 214 - -
Seca7g00856 223 MobiDBLite consensus disorder prediction 164 223 - -
Seca7g00856 223 Gene3D - 45 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00856 Seca-Chr7 10318169 10323147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00856 1 221 SNARE and Associated Proteins AT5G05760 63.964 4.27e-82 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00856 K08490 - gmx:100777383 347.436