Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00823 ATGTGCAGTGGTTCAAAAAGTAAACTTTCTTCCTCAGACCACGTCATGGAGAGTAAGCTTCAGAAGGAGAATTATGATGGTCTCAATAGCTTCTCATTTTTGCTTGAATTGTCTGCATCTGATGATTTTGAAGCTTTCAAAAGAGAAGTAGATGACAAGAGTTTGGATGTCAACGAGGCTGGCTTTTGGTATGGTAGAAGAATTGGATCAAAGAAGATGGGATCTGAAAAGAGGACCCCTCTCATGATTGCTTCTTTGTTTGGAAGCACAAGGGTGCTCAAGTATATCCTTGAGACAGGAAGGGTTGATGTGAACAGGGTTTGTGGTTCTGATAAAGCCACTGCTCTCCATTTTGCTGTTGCTGGGGGTTCTGAATTCTCCCTTGAGATTGTCAAGCTCTTGCTTGATGCTGGAGCAGATGCTGATTACCTTGATGCTTGTGGGAATAAGCCTGTTAATCTGATTGCTCCTGCCTTTAATTATTCAGCGAAATCGCGAAGGAAGGCCATGGAGTTGCTTCTCAGAGGTGAGGAAAGTGATCAACTCATCCACCAGGTGATGGAGCAAGAGATGTTCTCTATTCCAAAAGAAGGCACAGAGAAAAAGGAAGGAAGTGATAAGAAAGAATATCCTATTGATATATCGTTGCCTGACATAAACAACGGTATATATGGAACGGATGAGTTTAGGATGTATAGTTTCAAGGTGAAGCCATGCTCAAGGGCTTACTCCCATGATTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCTTGCCCAGAATTTCGCAAAGGTTCCTGCCAGAAGGGTGATTCCTGTGAGTATGCTCATGGTGTTTTTGAGTCCTGGCTACACCCTGCACAATACAGAACAAGGCTTTGCAAGGATGAGACTGGCTGCACTAGAAAAGTCTGCTTCTTTGCTCACAAACCGGAAGAGCTTCGACCCGTGTATGCTTCCACTGGGTCAGCTATGCCTTCACCAAAATCTTACTCATCTAGTGCACTTGACATGACAGCAATGAGTCCATTGGCTCTTAGTTCCTCATCTTTGCCTATGCCAACTGTTTCAACACCACCCATGTCTCCCTTGGCAGCTTCATCATCTCCCAAGAGTGGAAATTTGTGGCAGAACAAAATAAACCTTACTCCACCATCATTGCAGCTCCCAGGTAGCCGGTTGAAGGCTGCTTTGAGTGCCAGGGATCTGGACCTGGAGATGGAACTGCTTGGTCTAGATAGTCCTGCTAGACAACAACAGCAACAACAACAACAATTGATAGAAGAGATTGCCAGGATCTCTTCTCCATCATTCCGGAGCAAGGAATTCAATAGGATTGGTGAATTAACTCCAACTAACCTTGATGAACTGTTAGGATCAGCTGATCCTTCTGTATTATCTCAACTACATGGACTTTCAGTGCAACCTTCAACACCTACACAATTACAATCACAAACTAGTCTTCAGATGCGCCAAAACATGAACCACCTTCGCGCAAGCTATCCATCCAATAACATTCCTTCCTCACCTGTGAGGAAATCATCACCATTTGGGTTTGACACATCAGCTGCCGTGGCAGCTGCAGTGATGAATTCCAGGTCTGCTGCCTTCGCGAAGCAGCGAAGCCAAAGCTTCATTGATCGCGGCGCTGCAACACATCATCTTGGGCTGTCTTCACCTTCCAACCCTTCCTGTAGGGTGTCCTCTGGCCTTTCAGATTGGAGTTCTCCAACTGGGAAACTGGATTGGGGTGTAAATGGAGATGAGCTGAACAAGCTGAGGAGATCTGCTTCTTTTGGGTTCAGAAATAATGGGGTAGCTGCAACTGCATCTCCCATAGCACAATCAGAACATGCTGAGCCTGATGTCTCATGGGTTCATTCATTGGTCAAAGATGTTCCCTCTGAAAATTCTGAGATGTTTGGTGCTGAGAAGCAGCAGCAGCAGCAATATGATCTCAGTAAAGAGATGCTTTCACCATGGGTGGAGCAGCTGTATATAGAGCAGGAGCAGATGGTAGCATGA 2070 0.4546 MCSGSKSKLSSSDHVMESKLQKENYDGLNSFSFLLELSASDDFEAFKREVDDKSLDVNEAGFWYGRRIGSKKMGSEKRTPLMIASLFGSTRVLKYILETGRVDVNRVCGSDKATALHFAVAGGSEFSLEIVKLLLDAGADADYLDACGNKPVNLIAPAFNYSAKSRRKAMELLLRGEESDQLIHQVMEQEMFSIPKEGTEKKEGSDKKEYPIDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSSSALDMTAMSPLALSSSSLPMPTVSTPPMSPLAASSSPKSGNLWQNKINLTPPSLQLPGSRLKAALSARDLDLEMELLGLDSPARQQQQQQQQLIEEIARISSPSFRSKEFNRIGELTPTNLDELLGSADPSVLSQLHGLSVQPSTPTQLQSQTSLQMRQNMNHLRASYPSNNIPSSPVRKSSPFGFDTSAAVAAAVMNSRSAAFAKQRSQSFIDRGAATHHLGLSSPSNPSCRVSSGLSDWSSPTGKLDWGVNGDELNKLRRSASFGFRNNGVAATASPIAQSEHAEPDVSWVHSLVKDVPSENSEMFGAEKQQQQQYDLSKEMLSPWVEQLYIEQEQMVA. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00823 689 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Seca7g00823 689 PANTHER UNKEMPT FAMILY MEMBER 36 648 IPR045234 -
Seca7g00823 689 Gene3D - 6 221 IPR036770 -
Seca7g00823 689 SMART ANK_2a 76 106 IPR002110 GO:0005515
Seca7g00823 689 SMART ANK_2a 111 143 IPR002110 GO:0005515
Seca7g00823 689 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Seca7g00823 689 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Seca7g00823 689 MobiDBLite consensus disorder prediction 570 593 - -
Seca7g00823 689 ProSiteProfiles Zinc finger C3H1-type profile. 268 295 IPR000571 GO:0046872
Seca7g00823 689 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Seca7g00823 689 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Seca7g00823 689 MobiDBLite consensus disorder prediction 570 591 - -
Seca7g00823 689 Pfam Ankyrin repeats (3 copies) 74 142 IPR002110 GO:0005515
Seca7g00823 689 SUPERFAMILY Ankyrin repeat 30 166 IPR036770 -
Seca7g00823 689 FunFam Zinc finger CCCH domain-containing protein 66 226 294 - -
Seca7g00823 689 Gene3D - 270 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00823 Seca-Chr7 9780016 9782995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00823 29 684 C2H2 Transcription Factor Family AT5G12850 40.305 7.35e-145 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca7g00823 Ank_2 3.3e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00823 - - gmx:100783376 1035.4