Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00814 ATGATTGTAGGAAACTCAAATTCCAATAGTGATGGTGGAGACGTTGATCGCGTGAAAGGTTCATGGACTCCTCAAGAAGACGCAACGCTCTTGAAACTGGTGAGACAACACGGTCCTCGGAATTGGTCCATCATCAGCGCCGGAATTCCTGGCCGTTCCGGTAAGTCTTGCCGTCTCCGGTGGTGCAATCAGCTGAGTCCCGACGTTCAGCACCGTCCGTTTTCCCCTGCGGAGGACAGGATCATCATCAAAGCACACGCGATTCACGGAAACAAATGGGCGACAATTTCACGCCTCCTTCCTGGACGCACCGATAATGCAATAAAGAATCACTGGAACTCCACGCTCCGCCGTCGTATGGCGGAGCAATCACCACCGCCACCGCCACCGCAACTACCACAACGACAACCACAAACACCACCTCTTCCTCCTCGAGTCTCTCCACCTTCTACCTTGTTGGAACCTCATATGACAATGCTGAAGCGTCCTCCAGGTCCCTATGATGCACTCCTCCTTGACGCTTACGACGGTTTGGTGGATCTAAGACAGTGTCCTTTCAAACGGACCTGTACGGGGAACAGCAGCAGTTTTCGCTACGGGGAGGATAATACGACGGAGGATCCTGTAACGACGTCGTTGAGCCTGTTGCCGCCTGGAGAGAGCATAGAGAAAATGGAGGAGGATGAAGAAGAGGAAAAGGAAGATAAAAGAATGGAAGAATTTGAAGCGAATGTGATTGTGAATAAGGCGAGGCACGAGGAATTGTTGAAGACATTACAGCGCATGGTAGCAGAGGAGGTTAGGAGTTATGTTGAGAGCTTGCGGATTCATGACAGGGATGGGCTCGAACTTGGAACTGGGTTAGCTCCTACTAATCAACAATTCCAAAATAAAAAGTAA 900 0.5044 MIVGNSNSNSDGGDVDRVKGSWTPQEDATLLKLVRQHGPRNWSIISAGIPGRSGKSCRLRWCNQLSPDVQHRPFSPAEDRIIIKAHAIHGNKWATISRLLPGRTDNAIKNHWNSTLRRRMAEQSPPPPPPQLPQRQPQTPPLPPRVSPPSTLLEPHMTMLKRPPGPYDALLLDAYDGLVDLRQCPFKRTCTGNSSSFRYGEDNTTEDPVTTSLSLLPPGESIEKMEEDEEEEKEDKRMEEFEANVIVNKARHEELLKTLQRMVAEEVRSYVESLRIHDRDGLELGTGLAPTNQQFQNKK. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00814 299 PANTHER MYB PROTEIN-RELATED 19 139 - -
Seca7g00814 299 FunFam Transcription factor MYB44 73 119 - -
Seca7g00814 299 CDD SANT 73 116 IPR001005 -
Seca7g00814 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 69 IPR017930 -
Seca7g00814 299 MobiDBLite consensus disorder prediction 117 157 - -
Seca7g00814 299 Coils Coil 222 244 - -
Seca7g00814 299 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Seca7g00814 299 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Seca7g00814 299 FunFam MYB transcription factor 19 70 - -
Seca7g00814 299 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Seca7g00814 299 Gene3D - 72 139 - -
Seca7g00814 299 Gene3D - 18 70 - -
Seca7g00814 299 MobiDBLite consensus disorder prediction 1 21 - -
Seca7g00814 299 SMART sant 70 118 IPR001005 -
Seca7g00814 299 SMART sant 18 67 IPR001005 -
Seca7g00814 299 Pfam Myb-like DNA-binding domain 73 115 IPR001005 -
Seca7g00814 299 Pfam Myb-like DNA-binding domain 19 65 IPR001005 -
Seca7g00814 299 CDD SANT 21 63 IPR001005 -
Seca7g00814 299 MobiDBLite consensus disorder prediction 280 299 - -
Seca7g00814 299 MobiDBLite consensus disorder prediction 122 150 - -
Seca7g00814 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00814 Seca-Chr7 9645245 9646144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00814 14 121 MYB Transcription Factor Family AT4G37260 71.296 2.47e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g00814 Myb_DNA-binding 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00814 - - cam:101514420 290.812