Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00813 ATGTCGAACCACGACGCTCAAGCTTTCAATTGGCACTACAACACAGAACTTGACGAGGAAAACTTCGTAATCCGTGGCCGGAAACTCTTCTTCATCATCGTCCTCTTCGCCATTATCCTCATATTCACCGCTCTCTTCATCTGCGCTCGCTGGATCTGCCGCCGACACCACGACCTTCTCCCGACGGCGTTCCACGCGCCGGTGATGGCTTCTTCGACGCCGTTGTCGCAGGGACTCGACGCCGACACGATCAAGAAGCTACCGATTATACTGCATCAGGCATCGCCGTCGTGTGGTCCGAATCAGGAAAGAGAGTGCTGCATCTGCTTGAGCGCGTTCAGAGATGGCGAGAAGTTGAAGGTTCTGCCTGGATGTGACCATTGCTTCCATTGCGAGTGCGTTGATGAGTGGCTTGCGAATCACTCAAGTTGCCCTCTCTGTAGAGCTTCTCTCAAGCTCGATTCCTCGTTCCCTGAGATTTTGATCCAAGAACCACCGATTAGATATAGTCTCAGATTCTGA 522 0.5249 MSNHDAQAFNWHYNTELDEENFVIRGRKLFFIIVLFAIILIFTALFICARWICRRHHDLLPTAFHAPVMASSTPLSQGLDADTIKKLPIILHQASPSCGPNQERECCICLSAFRDGEKLKVLPGCDHCFHCECVDEWLANHSSCPLCRASLKLDSSFPEILIQEPPIRYSLRF. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00813 173 FunFam RING-H2 finger protein ATL66 71 153 - -
Seca7g00813 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 155 - -
Seca7g00813 173 CDD RING-H2_EL5-like 105 148 - -
Seca7g00813 173 SMART ring_2 106 147 IPR001841 -
Seca7g00813 173 Pfam Ring finger domain 105 148 IPR001841 -
Seca7g00813 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 153 IPR013083 -
Seca7g00813 173 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Seca7g00813 173 SUPERFAMILY RING/U-box 101 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00813 Seca-Chr7 9626689 9627210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00813 11 156 C3H Transcription Factor Family AT3G11110 42.105 1.66e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00813 - - gmx:100794554 217.624