Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00811 ATGGACAACACCTACTCACCTCCTCAACCCCAAGAAACCAAACCCACCGTCACCACCGTTCAAACCTCCACTCCCAGTGAAACATCTAACAGTACCAACAGCAGCAGTTGCAGCATCACCAACAACCGTAAATGCAAAGGCAAAGGTGGCCCTGACAATAACAAATTTAGATACCGTGGTGTGAGGCAACGAAGCTGGGGTAAATGGGTTGCTGAGATCCGAGAGCCACGTAAGCGAACTCGCAAGTGGCTTGGTACCTTCTCAACCGCTGAGGATGCTGCACGAGCCTATGACCGTGCCGCGATTATTCTCTACGGTTCTAGAGCTCAACTTAACCTCCAACCCTCCGGTTCCTCTTCTCAATCTTCCTCCTCTTCTCGTAACTCCTCATCTTCCTCTTCAACTCAAACCCTCCGTCCTTTACTTCCTCGCCCTTCAGGATTCGGTTTCACCTTCTCCTCCGGTTCTCATCTTTTCAACACCGTAACCGCCACTTCGGGATTCGTGCCGATTGGGGTTTATAATAACGGTTTCATCCCACAGGTGATGTATCCAGTTGATAATAACAACATACATCACTTTCATCGCTCTCACGAAGTGGTGCAACCAGTGCAACAACATCATCAAGAATCTGATTCTGGTAGTGGTGCGGTTATTCCTCACCATCATCATCATCATCATGCAAGTGGTGTTTCTGTTAGATCAACAACCTCGTACCAGAACCATACTCATCAGGATCACCATGGGCATGGACAACAAAATTATGCCATGTCGAATAATCATCATCATCAATTGCAGCAGCAGGAGAAACATGAGAATTGTGTGGGGGAGGGAATGAATTCGTTGGTGGGGACAAGTTTGTCTAATTCTGATCAGAATATTAATATAGAAGATGCAGCGGTGGTGGATCCGGATCCAACGACGTCGTTGGGGGTTGTGGGGACAGTGGGTCTTGGTTCTCCGTCTATTTGGCCTTTGACGAATGAGGAGGATTACCCTGCTAATTGCCTGTGGGATTATAATGATCCTTTCTTCTTTGATTTTTAA 1047 0.4718 MDNTYSPPQPQETKPTVTTVQTSTPSETSNSTNSSSCSITNNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQPSGSSSQSSSSSRNSSSSSSTQTLRPLLPRPSGFGFTFSSGSHLFNTVTATSGFVPIGVYNNGFIPQVMYPVDNNNIHHFHRSHEVVQPVQQHHQESDSGSGAVIPHHHHHHHASGVSVRSTTSYQNHTHQDHHGHGQQNYAMSNNHHHQLQQQEKHENCVGEGMNSLVGTSLSNSDQNINIEDAAVVDPDPTTSLGVVGTVGLGSPSIWPLTNEEDYPANCLWDYNDPFFFDF. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00811 348 MobiDBLite consensus disorder prediction 113 141 - -
Seca7g00811 348 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Seca7g00811 348 CDD AP2 57 114 IPR001471 GO:0003700|GO:0006355
Seca7g00811 348 MobiDBLite consensus disorder prediction 205 256 - -
Seca7g00811 348 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Seca7g00811 348 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Seca7g00811 348 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Seca7g00811 348 Pfam AP2 domain 57 105 IPR001471 GO:0003700|GO:0006355
Seca7g00811 348 FunFam Ethylene-responsive transcription factor 2 57 115 - -
Seca7g00811 348 MobiDBLite consensus disorder prediction 113 142 - -
Seca7g00811 348 MobiDBLite consensus disorder prediction 1 43 - -
Seca7g00811 348 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Seca7g00811 348 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Seca7g00811 348 MobiDBLite consensus disorder prediction 1 57 - -
Seca7g00811 348 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 16 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00811 Seca-Chr7 9592518 9593564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00811 43 348 AP2-EREBP Transcription Factor Family AT2G40220 43.925 6.99e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g00811 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00811 K09286 - gmx:100301892 253.832