Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00789 ATGGGCCATGCAGCCCATGACCCAGTGTTGCCCGAGGCCGAGATTAGGGTTTATCAACCTCTCTCCTTAAAGAGCCGCTTCTCCTCTTTCAGGTTTTCAGTTTGCTGCCTTGGTTGGAGTGGAGCACTTGCTTGGTTCCGAAATCCAAAAATGGCGCGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTTGACAAACTCGGTGGTGCATTTGCTCCTAAGCCGTCTTCTGGACCACACAAGTCTAGGGAATGCCTCCCACTCATTCTCATCTTGCGAAACCGGCTGAAGTATGCTCTGACATACCGTGAAGTCATTGCAATTCTGATGCAGCGCCATGTCCTTGTTGATGGCAAAGTCAGGACAGACAAAACATATCCAGCTGGTTTTATGGATGTTGTATCCATTCCTAAAACAAATGAGAACTTCCGCCTGCTGTATGACACCAAAGGCCGATTCCGTCTCCACTCAGTTAGGGATGACGAGGCGAAGTTCAAGCTCTGCAAGGTTCGTTCAATTCAATTTGGCCAAAAGGGTATCCCATACTTGAACACCTATGATGGTCGCACAATCCGCTACCCAGATCCTTCCATCAGGGCTAATGACACCATTAAGCTTGATCTAGATGAAAACAAGATTGTTGATTTCATCAAATTTGATGTTGGGAATGTAGTTATGGTAACAGGTGGAAGGAACAGGGGGCGTGTTGGAGTGATCAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACAATCCACGTTCAGGATGCCACTGGACATGAATTTGCAACTCGTATGGGCAATGTGTTCACTATTGGCAAGGGGACAAAACCATGGATATCTCTTCCCAAGGGTAAGGGTATTAAGTTATCAATCATTGAGGAAGCTAGGAAAAGGATTGCTGCTCAACAAGCAACTGCTGCTTAA 945 0.4656 MGHAAHDPVLPEAEIRVYQPLSLKSRFSSFRFSVCCLGWSGALAWFRNPKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPSIRANDTIKLDLDENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAAQQATAA. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00789 314 FunFam 40S ribosomal protein S4 51 167 - -
Seca7g00789 314 FunFam 40S ribosomal protein S4 225 295 - -
Seca7g00789 314 Gene3D - 225 295 IPR014722 -
Seca7g00789 314 SMART kow_9 224 251 IPR005824 -
Seca7g00789 314 ProSiteProfiles S4 RNA-binding domain profile. 92 154 - -
Seca7g00789 314 CDD KOW_RPS4 225 279 IPR041982 -
Seca7g00789 314 ProSitePatterns Ribosomal protein S4e signature. 58 72 IPR018199 -
Seca7g00789 314 Gene3D - 172 222 IPR038237 -
Seca7g00789 314 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 51 304 IPR000876 GO:0003735|GO:0005840|GO:0006412
Seca7g00789 314 Pfam KOW motif 227 260 IPR005824 -
Seca7g00789 314 Pfam S4 domain 97 140 IPR002942 GO:0003723
Seca7g00789 314 CDD S4 101 162 - -
Seca7g00789 314 Pfam RS4NT (NUC023) domain 53 89 IPR013843 -
Seca7g00789 314 Hamap 30S ribosomal protein S4e [rps4e]. 57 288 IPR000876 GO:0003735|GO:0005840|GO:0006412
Seca7g00789 314 SMART s4_6 92 156 IPR002942 GO:0003723
Seca7g00789 314 Pfam 40S ribosomal protein S4 C-terminus 262 308 IPR032277 -
Seca7g00789 314 FunFam 40S ribosomal protein S4 172 222 - -
Seca7g00789 314 Gene3D - 51 167 IPR036986 GO:0003723
Seca7g00789 314 Pfam Ribosomal family S4e 145 219 IPR013845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00789 Seca-Chr7 9350477 9353376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00789 51 311 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.571 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00789 K02987 - gmx:100795220 507.294