Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00785 ATGCGACGGTGGCAACGGAGGCTAGGCCACTCTGCAACGGTGGGCTGCGGTGGTCGTGATGGGTTGCGGCGGCGAGCCAGGGGTCTTAACGACGTGGCTAGTGAAACTGTATTGGTTGATGAAATCTCTTACCCTTCCAAGATCACTACTACCAAGCCCCTATCTCTGCTCGGTCATGGGATTACCGACATGGAGATCCACTTTCTCCAAGTGAAATTCTACTCAATTGGGGTTTATTTGGACCCTGAAGTAGTAGGACACTTGCAGCAGTGGAAAGGTCAACCTGCAAAGGAGCTGGAAGGGAAAGATGACTTCTTTGATGCTCTCATAGCTGGAAACTGTTATCAGCAAGAGAGGTACTTTTTCAGCTCTAAGGAAACTAAGTATCGAAATGGAAATCGTATGAACAGAACAACCAACTCTGGCTATTGGAAGGCAACAGGATCAGACAAAAAAATTTCACCATCAACAATAACTTGTGATGGTATTGCAGGGATAAGAAAAACTCTGGTATTCTATGAAGGGAAATCTCCAAATGGGTCTCGAACTGATTGGATCATGCATGAATATCGCCTTGTCAGTATAGAAACTACTGCTAGCAATTCATCCCAGAACTATGTAAACGTGATAGGGGATTGGGTACTCTGTCGCATATTCATGAAGAAAAGAAGTATAGAAATTGATGACAACACTGCTACCATGCTGAAGAAGAAAAATAGAGTGATGAATGTTCAGGGGACTCACCCAAGATTCTTTGATTTTATGAGGATCTTTGGTTACAGGGGAGTGGTGGCTATTAGGAGCGGTGGTGCACGGTGGCATTACACGGTGGCTAGGAGACAGAGGTCAGCAGTGGCTTACAGATGCAGGTCAAGGCGTTATGCTCTATTGGCTGAAGATGGGATTGTGAAGCTCTTCAATTTGGAGGAAGGTGGTGCCTTCACCTTTAGTAGTGCTGAGCATATGTTCAGGGAAGATGCTTATTTATCTAAGCTTCCTGTTTCCATTATAAACCCGTGGCATCAACGAGAAGGTTACGTCAAGTCAATGGCTGACTTAATTGAGAAAGAGCTCCAGAGTTTTTCAGAGCCAAAGGAGGTGATGATATTTTTCAGTGCCCATGGTGTACCCGTCAGCTACGTTGAAGATGTTGGGGATCCATACCGAGATCAAATGGAGGAGTGCATCTTCTTGATCATGCAGGAGTTGAAAGCTATAGGAATTAATAATGAGCACACACTCGCTTATCAAGTTCATTTTTAA 1263 0.4458 MRRWQRRLGHSATVGCGGRDGLRRRARGLNDVASETVLVDEISYPSKITTTKPLSLLGHGITDMEIHFLQVKFYSIGVYLDPEVVGHLQQWKGQPAKELEGKDDFFDALIAGNCYQQERYFFSSKETKYRNGNRMNRTTNSGYWKATGSDKKISPSTITCDGIAGIRKTLVFYEGKSPNGSRTDWIMHEYRLVSIETTASNSSQNYVNVIGDWVLCRIFMKKRSIEIDDNTATMLKKKNRVMNVQGTHPRFFDFMRIFGYRGVVAIRSGGARWHYTVARRQRSAVAYRCRSRRYALLAEDGIVKLFNLEEGGAFTFSSAEHMFREDAYLSKLPVSIINPWHQREGYVKSMADLIEKELQSFSEPKEVMIFFSAHGVPVSYVEDVGDPYRDQMEECIFLIMQELKAIGINNEHTLAYQVHF. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00785 420 ProSitePatterns Ferrochelatase signature. 369 388 IPR019772 GO:0004325|GO:0006783
Seca7g00785 420 SUPERFAMILY Chalcone isomerase 36 119 IPR036298 GO:0016872
Seca7g00785 420 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 115 234 - -
Seca7g00785 420 Pfam No apical meristem (NAM) protein 113 192 IPR003441 GO:0003677|GO:0006355
Seca7g00785 420 Pfam Ferrochelatase 325 419 IPR001015 GO:0004325|GO:0006783
Seca7g00785 420 Gene3D - 341 420 - -
Seca7g00785 420 Pfam Chalcone-flavanone isomerase 41 114 IPR016087 -
Seca7g00785 420 SUPERFAMILY Chelatase 320 419 - -
Seca7g00785 420 ProSiteProfiles NAC domain profile. 51 221 IPR003441 GO:0003677|GO:0006355
Seca7g00785 420 Gene3D NAC domain 68 226 IPR036093 GO:0003677|GO:0006355
Seca7g00785 420 SUPERFAMILY NAC domain 116 221 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00785 Seca-Chr7 9305257 9307992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00785 110 224 NAC Transcription Factor Family AT5G13180 57.391 2.48e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca7g00785 Ferrochelatase 1.1e-18 CL0043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00785 K01772 - gmx:100527806 226.483