Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00784 ATGGGTGGGAATTCCCCATGTGCCTCATGCAAGCTTCTGAGACGCCGATGCACAAAAGATTGCACCTTTGCTCCTTATTTCCCTTCTGATGAACCCCAAAAGTTCGCCATCGTTCACAAGGTTTTTGGCGCTAGCAACGTTAGCAAAATGTTGCAGGAACTTCCAATTCACCAGAGAGCAGATGCAGTGAGCAGTCTAGTGTATGAGGCAAATGCAAGAGTGAGAGACCCAGTGTATGGTTGTGTTGGAGCCATATCTTACCTTCAAAATCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTTGCTCAAGCAGAGATACTCTGCATCCAGATGCAACATGAGCCTGTGATTAATCCAAGCCCAGAAATAATTAGCCCAGATCAGAAATCTTACTATCTACAAGATGACCTCTCTCAGTATCTCAATTTTGGCAATTCTGGGAATGTAATCCATGACTCTCTCAAGAGAGAGAGCATCTATGGCTATGGACATGACATGGTTTCTTGA 507 0.4438 MGGNSPCASCKLLRRRCTKDCTFAPYFPSDEPQKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPVINPSPEIISPDQKSYYLQDDLSQYLNFGNSGNVIHDSLKRESIYGYGHDMVS. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00784 168 Coils Coil 85 105 - -
Seca7g00784 168 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Seca7g00784 168 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Seca7g00784 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00784 Seca-Chr7 9297823 9299334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00784 3 128 AS2 family AT2G30130 82.540 1.98e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca7g00784 LOB 1.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00784 - - lang:109360574 301.597