Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00778 ATGAACAGAAAAAGGCATCTAAATCAGTTGAAGTCTCCATTCGATTCTTACCCCTTTGAAGCAGTTATCTTTGGCTCATGGAAAGCAGTGGAGTTCATAACAATCGAGTCAGGAACTATGACTGTACATTTTATAGATAATCACCACATGGCTATGCAGAAAGGCCCCTTGTCAGATGTTCGAACAAGGTCAAGGAAAGCTACTTCATCAGATTGCTCCTGTTTTTTACGTCCGGGAATTGACATATGTGTGCTAGCAGCCCCTCAACGTACTGATAATTCAGATGAATTTGGTCTCAAGCCTGTTTGGCTTGATGCTAAAATAAGTTCTATACACAGACAGCCCCATGAATCTGAGTGCGCATGTGAGTTTTATGTCAACTTTTATGTTAATCAAGGTTCACTTGGTGCAGAGATAAGAACTCTTAATAAGGAGATTAAAGTAGTTGGAATCAATCAAATCTCTATCCTCCAAAGACTTGAACATAATCCTTGTGAAGAACAGCACTACCGGTGGGCTTCATCTGAGGACTGCTCTGCAATATCACACACTAAATTCCTTTTGGGAAAATTTTTGACCGATATATCATGGTTAGTTGTGGCATCTGTTTTAAAGAAGGTTTCATTCTGTGTAAGATCTGTAGAAAACAAGCTCGTGTATCAAATTTTGGAAAGAGGTGTTATTAGCACTCCATTGAATGCTGAGTCTCATATAAATGTTGTGAATTTCAAAGTAGACAATGGCATGTTAATACCCATTGTTTCTCAAGTTGCTATAACTGGCACCAAGAGGGCTGATCGTGATCATGCACATGAATCCCATGAAGATAAAATGTCTCCATCTTATAATGTTGAGGGCTTACGGCGTTCCAAACGCCGGCATGTACAACCTGAACGTTACCTTGGTTGTGATGTTCCTGAGCTTGATGTTGGTTCTTTCAGAAACAGGCCACCAGTTAAGATAGACACATGGAAAGATGATGAATTGTCATTGCCATTATCATCCCTGTTTGGTTTGCAGCAAAACTGTCCAGAAAAGAATGCTGACAACTGTCAAAAGGTCAACAAGGTGAAAACCTGCCGGGAGCTTCTGGTGTACAATAGGAGGAAGGGTAAAAACAGAAAGATAAATTCAGGTGATGATGATCAAAATGAACATCAAAATCAACTTGCTATTATTCCTCTTCCTGATCATGGCAATCCAATAGCTGTTGAGCATAGTGATCTAACTGACAAGGTTGCTAGAAGTTCTGAACATGAATCTACTGAAATGTCTTCCAAATATTATCATCTGGTTAATAAACCTAAACCAAACAAAAACAATATTGGTTTGTTAACTCTTGAGCCTGCAAAGTCAGATGACGCAGGGAAGAATGATGATCTTTCTTTGAGATACCATTACAGTTATGGCACCCCTAAGTTACAGAAAAAGAGTTTATGTGATTTGGATGATATGGATCTTGGAAATAAATGGGGAGGGGTAAAATCTAATAAAGGACCTAAAGAGAGAACATATCGTTCAACATTCTCAACAAGTAGAAAATATGGCGAAGAAAGAACTTATAAAGACAGGACCTTAAAGGGATCTGCCTACCAGGATTTGATAAATTTATACCTCAAGAATATTGATACAAGGCCAGACACAGAAGAAACGCCTATTCAGGACCAGTGGAAGCAATGCAACACAACAAGCAGTTTTGGACAAGAGAGAGAAACAGAGACAACACATACAAAGGATGCAGGAGAAGAATCTGAAAACGAAATGTTGTGGAGAGAATATGATATGGCATTGGCATCACTTTATATTGAAGAAGGCATAGAGGGCTCAAATGCTGCCAATGAGGAAAAATCGAAAAACGTTTGTGAGCATGATACTAGATTGGATGAACAACTTGGAATATACTGCCTTAAATGTAATGTTGTGATCACCGAGATCCGAGATGTCATGGCACCCTTTGCTAAACAACATAGTACAGTGTGGTACCCAGAGGAGAAGCAGTGTGCTGGAGAAGAGGCAGAGGCCAAAGCTGATGAAGATGGTGATATCAATCTTTTCTCAACTAGTGCTTCTCCTGATGAACCTATATCTGAAGAGAATGATAATGTTTGGGCATTAATTCCCGAACTCAGAAAAAAGTTGCATGTCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAATATTGCAGGGTCTACAAATCCAAGACTTATGGATGCTGAATCTGAAAACAGAGGTGGCTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTTCTCATTATTGCTTTTCTCGTTAGCTACTTGAAGTTATTCCCAGGGAAGAGACCACTAGTCCTTGCTCCAAAAACAACACTGTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCAGTGTATCTGATTCATGGTCGTAGAACCTACAGGGTATTCAAGCAGAAATCAATCGATATTCCTGGAATTCCCAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGCCTGGAGAAGATACAAAAATGGCACTCACAACCGAGTGTTCTAATCATGGGCTATACTTCATTTTTAACATTAATGCGAGAGGATTCAAAGTATGCACACAGGAAGTTTATGGCTAAAGTATTGAGGGAAAGTCCTGGGATCCTGGTGCTGGATGAAGGGCACAATCCTAGAAGCACTAAATCAAGGTTGAGAAAAGTTTTGATGAAAGTACAGACAGAATTGAGAATATTACTTTCAGGTACTTTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTCTGCTTGGCAAGACCAAAATTTGCTCATGAAGTACTGCAAGCATTAGACCCAAAATACAGGAGAAAAAGGAAAGGAACAGAAAAATCACGTAATTCAATAGAGTCACGGGCTAGGAAATTCTTCTTAGACACAATTGCTAAGAAAATTGACTCAAATATTGGTGATGAGAGGATGCAAGGTCTAAACATGTTGAGAAATGTGACAAATGGTTTTATAGATGTTTATGAAGGTGGGAGTTCTGATGGTCTACCTGGTTTACAAATTTATACATTGCTAATGAATACAACTGATATACAGCAGGAGATTTTACAGAAACTGCACAAGAAAATGGCTAAGTGCAATGGATACCCTCTTGAGTTAGAGCTTTTGATAACCCTTGGATCAATACATCCTTGGTTGGTCAAAACAGCTGTATGTGCTGAGAAGTTTTTCACTAAGGAACAACTGGTTGAGCTAGATAATTGGAAGTATGATTTGAAAATAGGGTCAAAAGTAAAATTTGTTTTGAGTCTTATCTATCGCGTTTTCCAGAATGAGAAGGTTCTTATCTTCTGCCACAACATTGCACCTGTCAAATTATTTCTAGAATATTTTGAGAGGTACTTACACTGGCAAAGAGGCCGGGAGGTTTTGGTACTAACTGGGGAATTAGAGCTCTTTGAACGTGGGAGAATAATGGATAAGTTTGAGGAACCTGGTGGAGTATCTAAGATACTCCTTGCTTCAATCACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCTTCTCGTGTCATTATGTTGGATTCAGAGTGGAACCCTTCAAAAACAAAGCAGGCTATTGCGCGGGCCTTTCGTCCTGGTCAGCAAAAAGTTGTTTATGTGTATCAGCTTTTGGTGACAGGTTCATTGGAGGAGGATAAATATAGAAGAACCACTTGGAAAGAGTGGGTATCAAGCATGATTTTTAGTGAGGCCTTTGTGGAGGACCCTTCTAAATGGCAAGCTGAGAAGATTGAAGATGATATACTAAGAGAAATGGTTGCGGAGGACAGGTCAAAAGTATTCCATATGATAATGAAGAATGAGAAAACTTCAACAAACAAATGA 3882 0.3913 MNRKRHLNQLKSPFDSYPFEAVIFGSWKAVEFITIESGTMTVHFIDNHHMAMQKGPLSDVRTRSRKATSSDCSCFLRPGIDICVLAAPQRTDNSDEFGLKPVWLDAKISSIHRQPHESECACEFYVNFYVNQGSLGAEIRTLNKEIKVVGINQISILQRLEHNPCEEQHYRWASSEDCSAISHTKFLLGKFLTDISWLVVASVLKKVSFCVRSVENKLVYQILERGVISTPLNAESHINVVNFKVDNGMLIPIVSQVAITGTKRADRDHAHESHEDKMSPSYNVEGLRRSKRRHVQPERYLGCDVPELDVGSFRNRPPVKIDTWKDDELSLPLSSLFGLQQNCPEKNADNCQKVNKVKTCRELLVYNRRKGKNRKINSGDDDQNEHQNQLAIIPLPDHGNPIAVEHSDLTDKVARSSEHESTEMSSKYYHLVNKPKPNKNNIGLLTLEPAKSDDAGKNDDLSLRYHYSYGTPKLQKKSLCDLDDMDLGNKWGGVKSNKGPKERTYRSTFSTSRKYGEERTYKDRTLKGSAYQDLINLYLKNIDTRPDTEETPIQDQWKQCNTTSSFGQERETETTHTKDAGEESENEMLWREYDMALASLYIEEGIEGSNAANEEKSKNVCEHDTRLDEQLGIYCLKCNVVITEIRDVMAPFAKQHSTVWYPEEKQCAGEEAEAKADEDGDINLFSTSASPDEPISEENDNVWALIPELRKKLHVHQKKAFEFLWQNIAGSTNPRLMDAESENRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQKSIDIPGIPKPTDDVKHVLDCLEKIQKWHSQPSVLIMGYTSFLTLMREDSKYAHRKFMAKVLRESPGILVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAHEVLQALDPKYRRKRKGTEKSRNSIESRARKFFLDTIAKKIDSNIGDERMQGLNMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNTTDIQQEILQKLHKKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFTKEQLVELDNWKYDLKIGSKVKFVLSLIYRVFQNEKVLIFCHNIAPVKLFLEYFERYLHWQRGREVLVLTGELELFERGRIMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSKWQAEKIEDDILREMVAEDRSKVFHMIMKNEKTSTNK. 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00778 1293 Gene3D - 1015 1293 IPR027417 -
Seca7g00778 1293 MobiDBLite consensus disorder prediction 668 696 - -
Seca7g00778 1293 MobiDBLite consensus disorder prediction 264 289 - -
Seca7g00778 1293 Pfam Helicase conserved C-terminal domain 1095 1211 IPR001650 -
Seca7g00778 1293 Pfam SNF2-related domain 710 986 IPR000330 GO:0005524|GO:0140658
Seca7g00778 1293 Gene3D - 687 980 IPR038718 -
Seca7g00778 1293 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1098 1259 IPR001650 -
Seca7g00778 1293 MobiDBLite consensus disorder prediction 571 585 - -
Seca7g00778 1293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1012 1276 IPR027417 -
Seca7g00778 1293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 698 939 IPR027417 -
Seca7g00778 1293 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 738 937 IPR014001 -
Seca7g00778 1293 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 52 1291 IPR044567 GO:0080188
Seca7g00778 1293 MobiDBLite consensus disorder prediction 563 585 - -
Seca7g00778 1293 SMART ultradead3 709 945 IPR014001 -
Seca7g00778 1293 SMART helicmild6 1127 1212 IPR001650 -
Seca7g00778 1293 CDD DEXHc_ATRX-like 713 944 - -
Seca7g00778 1293 CDD SF2_C_SNF 1087 1223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00778 Seca-Chr7 9189624 9201654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00778 1085 1230 RAD5 or RAD16-like Gene Family AT5G43530 34.932 1.86e-13 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca7g00778 SNF2_N 1.1e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00778 K10875 - gmx:100811703 1927.14