Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00716 ATGAGGAAAAGAGAGAGAGAAAATCCTTGTGGGGTGTGTGGGCACTATCACAAATATGAAGAAGGGGAAGTGTGTTCGATTTGTGGTCACCGGATTCCGGTCGGATCGGAGAAAACTTCGATACAAGTTAGCGCCTTTCCTTCGGTGATTTTGCCGGAATTTCTTTACCTGGGAAGCTATGATAACGCATCACGTTCAGAGCTTCTCAAGACTCAGGGGATTTCACGTATCCTCAATACTGTCCCTTCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCACTGCCTCCCAGATGACAAAACTTTGCCATTTGATGAAGCAAACCAGTTTTTAGAGCAATGTGAGAAGGATAAGGAGCGTGTTCTGGTCCATTGCATGTCCCCAGCTATTGTGATTGCATACTTGATGAAGTCTAAAGGATGGAGACTTGCACAGAGCTATCAGTGGGTAAAGGAACGGAGACCTTCTGTTGAATTAACTGAAGGTGTCTACAAGCAACTGCAGGAGTATGAGCAAAAGCTATATGGATCGGTTGATGGTGGCGGCTCTCTGCTACCTGGTTTCTCACCTACAGCAACTCCATCACTTAGCTTTGGCTTCCCAAAGATCAATGATTCAGCTCCACTTCCTACCTTCAGCAGTGGTGGAACTCCTTCAATTTTCTCGCGAGCACCCTTGAACATTGCTCCTACTGAGTTTACATTTGGAGCTGGTCAGACACAGAAGAGTGTGACTGGAAGCCCATTTAATGCAAATCCACCTAATCCAAATGTCACTGATATCCAAATGGATGGTTCTTGA 804 0.449 MRKRERENPCGVCGHYHKYEEGEVCSICGHRIPVGSEKTSIQVSAFPSVILPEFLYLGSYDNASRSELLKTQGISRILNTVPSCQNLYKNSFTYHCLPDDKTLPFDEANQFLEQCEKDKERVLVHCMSPAIVIAYLMKSKGWRLAQSYQWVKERRPSVELTEGVYKQLQEYEQKLYGSVDGGGSLLPGFSPTATPSLSFGFPKINDSAPLPTFSSGGTPSIFSRAPLNIAPTEFTFGAGQTQKSVTGSPFNANPPNPNVTDIQMDGS. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00716 267 Gene3D Protein tyrosine phosphatase superfamily 40 180 IPR029021 -
Seca7g00716 267 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 267 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Seca7g00716 267 FunFam Protein-tyrosine-phosphatase IBR5 36 181 - -
Seca7g00716 267 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 177 IPR020422 GO:0006470|GO:0008138
Seca7g00716 267 MobiDBLite consensus disorder prediction 242 267 - -
Seca7g00716 267 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 176 IPR029021 -
Seca7g00716 267 Pfam Dual specificity phosphatase, catalytic domain 55 174 IPR000340 GO:0008138|GO:0016311
Seca7g00716 267 SMART dsp_5 46 174 IPR020422 GO:0006470|GO:0008138
Seca7g00716 267 CDD DSP_plant_IBR5-like 47 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00716 Seca-Chr7 8401800 8408632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00716 1 161 Protein tyrosine phosphatase (PTP) family AT2G04550 72.781 9.81e-92 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00716 K04459 - gmx:100808721 492.271