Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00708 ATGATTTCGCAGCTGAATCTAAATGGCTTCTTTCTTTTCAACCCTTCTTCCATGCTTCAAAAACCTGTCTCAAGGAAGCAAAACCCGTCTTCTCTTTCTCTCAAAGTTCGAAGCTTTCGCGGTTCCGAGCCTCCCCATGTTCCTTCTTTTTCTCCTGTGAAACCCCTTCGTGTGCCTCGGCACCTGAGAACCGAAGCACGGGTTGTGCTAATGGATTACCTCCATTCAACTCGTGGCTACAGCTTCTTGGATGCCGAGTACATCAGCAAAAACTCGCCGCGTTTCGTTGAATCTTTGGTTTCAAAAATCGGTGGTGAAGAAGGTGATGTTTCTCGATCAGATGATGATGTTGCAGGGTCTTTACGGAAGTTTCTGAGGTACAACCCCATCAATGAGTTTGAACCTTTTTTTGAGAGTTTGGGCATTATCCCTCATGAGTTGCATTTGTTTCTCCCACGTGGAATGATGTTTTTGTCTGATGATGATGTTTTGCTTGAAAATTTTCATGTTTTGACTAATTATGGGGTCCCAAGAAATAGAATAGGGAAAATTCTTAAGGAAGCAAAAGAGGTTTTTGGGTACCCTAGTGGATTGTTGTCATTGAAATTTCAAGCTTATGAAAATTTGGGTTTGAGTAGGTCCAGGGTCATCAAGCTCATTGTTTGTTGCCCTTCACTTTTGATTGGTGAAACAAGCAGTGAATTAGTCACTGTTCTTGATTGGTTGAAGAGAATTGGTATTGAACATGATTGGATTGGAAAATACTTGTCTTGTTCAAAAACATATAACTTCAAAAAAATGCTTGATGCTATGCAATTTCTTCATAAAATGGGCTATTCTGAGAAACAGATGCACAATTTATTCAAGGAAAATCCTGCATTATTGTTGGAAGGTCTTGAGAAGAAGGTGTATGTGTTTTTGGGTCTATCACTTAAGTTAGGTCTCAAGAAGAATGTGATTTATTCTTCTTTTTTAGACTATCCTCATATCTTATCAAGCAAGTCTGTAAAGAATCTTTTGGGAGTGGTTGGTTTTTTGTATTATATTGGAATGGGAACAGATGACATTGCACACATTTTGTCTAATCACATGCATCACCTGAGCTCTCATCCCTTGAAAGGCCCTAAAGCTGTTTGTTTTCAGTTAAAAATTAGAAAAGCTGAGTTATTCCAAATCATAAAGGATGATCCACTGAAGCTGATTATTTTGGCTTCAAAACTGAAACAGAATAGTTCTGTACTGTTATCTTGTGATGAATCAAGTAAACATTTGGAGAAAACAACATTCTTGCGGAAACTTGGATATGCAGAGAACTCTGAGGAGATGGAAAAAGCAGTAAAAAGGTTCCGAGGGAGAGGTGATCAATTACAGGAGAGGTTTGATTGCCTGGTTGAAGCTGGTTTGGACTATAACATTGCAATCAAAATGATACAACGTGCTCCTATGATTCTAAACCAGAACAAAGTTGTAATTGAAAAGAAGATTGATTTCTTAAGAAACATTTTAGGTTATCCATTAGAATGTTTAGTTGGATTTCCAGCATACTTGTGCTATAATTTGGAGAGAATTGTGCTCAGATTTTCAATGTATGCTTGGTTGAAGGAGAGGAAAGCAATAAATCCAATGTTGACCTTGAGCTCTATCCTTGTATCATCTGAGGAACGGTTTATAAAATACTTTGTGAATGTGCATCCTGAAGGTCCAATCATCTGGAAAGGTCTAAAGAGTTTATTGCAAAAAGATAAGAGCCAACACATCCTTTGTATTTAA 1770 0.3791 MISQLNLNGFFLFNPSSMLQKPVSRKQNPSSLSLKVRSFRGSEPPHVPSFSPVKPLRVPRHLRTEARVVLMDYLHSTRGYSFLDAEYISKNSPRFVESLVSKIGGEEGDVSRSDDDVAGSLRKFLRYNPINEFEPFFESLGIIPHELHLFLPRGMMFLSDDDVLLENFHVLTNYGVPRNRIGKILKEAKEVFGYPSGLLSLKFQAYENLGLSRSRVIKLIVCCPSLLIGETSSELVTVLDWLKRIGIEHDWIGKYLSCSKTYNFKKMLDAMQFLHKMGYSEKQMHNLFKENPALLLEGLEKKVYVFLGLSLKLGLKKNVIYSSFLDYPHILSSKSVKNLLGVVGFLYYIGMGTDDIAHILSNHMHHLSSHPLKGPKAVCFQLKIRKAELFQIIKDDPLKLIILASKLKQNSSVLLSCDESSKHLEKTTFLRKLGYAENSEEMEKAVKRFRGRGDQLQERFDCLVEAGLDYNIAIKMIQRAPMILNQNKVVIEKKIDFLRNILGYPLECLVGFPAYLCYNLERIVLRFSMYAWLKERKAINPMLTLSSILVSSEERFIKYFVNVHPEGPIIWKGLKSLLQKDKSQHILCI. 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00708 589 Coils Coil 439 459 - -
Seca7g00708 589 Pfam mTERF 271 436 IPR003690 GO:0003690|GO:0006355
Seca7g00708 589 Pfam mTERF 424 556 IPR003690 GO:0003690|GO:0006355
Seca7g00708 589 Gene3D Transcription termination factor 3, mitochondrial 123 235 IPR038538 -
Seca7g00708 589 Gene3D Transcription termination factor 3, mitochondrial 305 567 IPR038538 -
Seca7g00708 589 PANTHER CGI-12 PROTEIN-RELATED 70 297 IPR003690 GO:0003690|GO:0006355
Seca7g00708 589 FunFam mTERF family protein 110 261 - -
Seca7g00708 589 SMART mt_12 439 469 IPR003690 GO:0003690|GO:0006355
Seca7g00708 589 SMART mt_12 474 505 IPR003690 GO:0003690|GO:0006355
Seca7g00708 589 SMART mt_12 322 352 IPR003690 GO:0003690|GO:0006355
Seca7g00708 589 SMART mt_12 285 316 IPR003690 GO:0003690|GO:0006355
Seca7g00708 589 SMART mt_12 506 537 IPR003690 GO:0003690|GO:0006355
Seca7g00708 589 SMART mt_12 182 212 IPR003690 GO:0003690|GO:0006355
Seca7g00708 589 SMART mt_12 217 248 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00708 Seca-Chr7 8273364 8280585 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca7g00708 mTERF 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00708 - - aprc:113846643 837.41