Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00700 ATGCGACGAGGTAGAGCCGCAGATCCAACCGTGGAAAACGAACCCATCAGAAGCCCGGCGAAGGAAACGCGATTCCGCGGCGTTAGGAAGCGTCCGTGGGGACGATTCGCCGCGGAGATAAGAGATCCGTGGAAAAAAGCCCGTGTTTGGCTTGGTACCTTCGACTCCGCGGAAGACGCGGCCCGGGCCTACGATGCGGCGGCCCGGTCCTTCCGCGGGCCCAAAGCCAAGACAAACTTCCCCATCCCTCCTGACATCGACATCACAAACTCTCATCAGATTCCTCTCTATCATCAACAAGCCCATGGGTTTTCCAAGTTCGACCCTGTTCAGGTGAACCGGCCCACCACAAGCGGCATGAGCAGCACCGTGGAGTCTTTCAGCGGGCCTAGGGTTCCTTCCTCTTCCACTACCGCCCCTAGGGTTCGCAGGCCCGTTAACCCTGTTCCTATCGATGACTGTCACAGCGATTGCGATTCCTCTTCCTCTGTAATCGACGATCAGGATTGCGTTCTCACATCTTCCTTCCGCAAACCCCTCCCTTTCGATCTCAACCTCCCTCCTCCCTCCGCCGATGACTTCGATTTCACCGCCGACGAGCTCCGAGCCACCGCCTTGTGCCTCTGA 627 0.5837 MRRGRAADPTVENEPIRSPAKETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPIPPDIDITNSHQIPLYHQQAHGFSKFDPVQVNRPTTSGMSSTVESFSGPRVPSSSTTAPRVRRPVNPVPIDDCHSDCDSSSSVIDDQDCVLTSSFRKPLPFDLNLPPPSADDFDFTADELRATALCL. 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00700 208 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Seca7g00700 208 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Seca7g00700 208 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Seca7g00700 208 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Seca7g00700 208 MobiDBLite consensus disorder prediction 117 146 - -
Seca7g00700 208 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Seca7g00700 208 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Seca7g00700 208 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Seca7g00700 208 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Seca7g00700 208 MobiDBLite consensus disorder prediction 117 142 - -
Seca7g00700 208 MobiDBLite consensus disorder prediction 1 25 - -
Seca7g00700 208 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 171 - -
Seca7g00700 208 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00700 Seca-Chr7 8196803 8197429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00700 1 208 AP2-EREBP Transcription Factor Family AT1G50640 50.427 9.47e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g00700 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00700 K09286 - gmx:100795557 248.054