Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g00699 | ATGCCAGAAAACCGCCAGGTTCCAAGGAATGCTTCTTCTAATCCATCTAGTGACAACATTGAAGAAGCAATTCGGCGTTTGAAAATCAATGATAATAGGGACAGAGATGCTGCAGCTCAATCTATCCCATATCCAGATCGACCTGGTGAACCTGATTGCTTATATTATTTGAGGACTGGAATGTGTGGTTATGGAAGTAACTGTCGATATAATCACCCTCCTCATGTTTCACTTGTTCCTCAATATGGTGAAGAACTCCCTGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGATCCCGTATTATTCAATACTCTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGATCTTGTAAGTTTGGAGTTGCATGCAAGTTTCATCATCCACAGCATGCCTCCTTTGGAGCTTACCCAATGGCTGGATCTCCTGCCTCAACAATGATTCCTACATCAGGTTTACCATATGTTGGTAACTTTCCTGCATGGACAGTATCAAGAATGTCATATTTATCTGGGCAGGGCCTTCAATCTTATGTTCCTCCTCTTCTGTCTTCTTCACAAGGCATTATACCTGCGCAGAACTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCTACTGGTTTTCTTGGATCTAATCTTGTCTACGACTTCATGAATCCAAACGAGTCATTTTCTGGTGGGCAGGCAATAAGCTCAACTCTCCCAGATAGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCATCCAAAAGAAAGAATAGCCCAATCACCAATAAATCCACTTGGCCTTCCTTTGAGACCTGGGCAGGCCATATGCTCTTATTACAGAATCTATGGAATATGCAAATTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCGCCTGCTCTATCTGTACTTAACTCATCTATCATTAGTAATCCAAGGGAGTTGTCAACTGTTAAACCACCTGAGACATCTCCATCTAAATTATCAAGTGATAAGCTTAAGCACTTTGATGATACAAAAGCTACTACAGAGGATTCACCCAAACAAGCTGATACTACTTCAAATTCTGAGTCTTTACATGAATAA | 1245 | 0.4161 | MPENRQVPRNASSNPSSDNIEEAIRRLKINDNRDRDAAAQSIPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPPHVSLVPQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGADPVLFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASFGAYPMAGSPASTMIPTSGLPYVGNFPAWTVSRMSYLSGQGLQSYVPPLLSSSQGIIPAQNWNNYMGNMNPAMPTGFLGSNLVYDFMNPNESFSGGQAISSTLPDRPDQPECRYFMSTGTCKYGSDCKFHHPKERIAQSPINPLGLPLRPGQAICSYYRIYGICKFGPTCKFDHPVLTIPQNYGLTSPALSVLNSSIISNPRELSTVKPPETSPSKLSSDKLKHFDDTKATTEDSPKQADTTSNSESLHE. | 415 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g00699 | 414 | PANTHER | PROTEIN PHOSPHATASE RELATED | 21 | 365 | - | - | |
Seca7g00699 | 414 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Seca7g00699 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 270 | 298 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Seca7g00699 | 414 | MobiDBLite | consensus disorder prediction | 381 | 398 | - | - | |
Seca7g00699 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 134 | 162 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | SMART | c3hfinal6 | 136 | 161 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | SMART | c3hfinal6 | 270 | 297 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | SMART | c3hfinal6 | 313 | 340 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | SMART | c3hfinal6 | 89 | 116 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | SMART | c3hfinal6 | 47 | 74 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | SUPERFAMILY | CCCH zinc finger | 274 | 299 | IPR036855 | GO:0046872 | |
Seca7g00699 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 313 | 341 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | Gene3D | - | 120 | 169 | - | - | |
Seca7g00699 | 414 | MobiDBLite | consensus disorder prediction | 399 | 414 | - | - | |
Seca7g00699 | 414 | SUPERFAMILY | CCCH zinc finger | 133 | 162 | IPR036855 | GO:0046872 | |
Seca7g00699 | 414 | Gene3D | - | 269 | 343 | - | - | |
Seca7g00699 | 414 | Gene3D | - | 45 | 119 | - | - | |
Seca7g00699 | 414 | MobiDBLite | consensus disorder prediction | 367 | 414 | - | - | |
Seca7g00699 | 414 | SUPERFAMILY | CCCH zinc finger | 312 | 339 | IPR036855 | GO:0046872 | |
Seca7g00699 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 49 | 74 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 315 | 339 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 92 | 116 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 272 | 297 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 138 | 161 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 89 | 117 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | SUPERFAMILY | CCCH zinc finger | 93 | 117 | IPR036855 | GO:0046872 | |
Seca7g00699 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 47 | 75 | IPR000571 | GO:0046872 | |
Seca7g00699 | 414 | SUPERFAMILY | CCCH zinc finger | 52 | 74 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g00699 | Seca-Chr7 | 8170865 | 8175066 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g00699 | 1 | 350 | C3H Transcription Factor Family | AT1G04990 | 52.762 | 8.34e-121 | 355 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Seca7g00699 | zf-CCCH | 1.1e-08 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g00699 | - | - | vra:106765262 | 728.013 |