Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00699 ATGCCAGAAAACCGCCAGGTTCCAAGGAATGCTTCTTCTAATCCATCTAGTGACAACATTGAAGAAGCAATTCGGCGTTTGAAAATCAATGATAATAGGGACAGAGATGCTGCAGCTCAATCTATCCCATATCCAGATCGACCTGGTGAACCTGATTGCTTATATTATTTGAGGACTGGAATGTGTGGTTATGGAAGTAACTGTCGATATAATCACCCTCCTCATGTTTCACTTGTTCCTCAATATGGTGAAGAACTCCCTGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGATCCCGTATTATTCAATACTCTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGATCTTGTAAGTTTGGAGTTGCATGCAAGTTTCATCATCCACAGCATGCCTCCTTTGGAGCTTACCCAATGGCTGGATCTCCTGCCTCAACAATGATTCCTACATCAGGTTTACCATATGTTGGTAACTTTCCTGCATGGACAGTATCAAGAATGTCATATTTATCTGGGCAGGGCCTTCAATCTTATGTTCCTCCTCTTCTGTCTTCTTCACAAGGCATTATACCTGCGCAGAACTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCTACTGGTTTTCTTGGATCTAATCTTGTCTACGACTTCATGAATCCAAACGAGTCATTTTCTGGTGGGCAGGCAATAAGCTCAACTCTCCCAGATAGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCATCCAAAAGAAAGAATAGCCCAATCACCAATAAATCCACTTGGCCTTCCTTTGAGACCTGGGCAGGCCATATGCTCTTATTACAGAATCTATGGAATATGCAAATTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCGCCTGCTCTATCTGTACTTAACTCATCTATCATTAGTAATCCAAGGGAGTTGTCAACTGTTAAACCACCTGAGACATCTCCATCTAAATTATCAAGTGATAAGCTTAAGCACTTTGATGATACAAAAGCTACTACAGAGGATTCACCCAAACAAGCTGATACTACTTCAAATTCTGAGTCTTTACATGAATAA 1245 0.4161 MPENRQVPRNASSNPSSDNIEEAIRRLKINDNRDRDAAAQSIPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPPHVSLVPQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGADPVLFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASFGAYPMAGSPASTMIPTSGLPYVGNFPAWTVSRMSYLSGQGLQSYVPPLLSSSQGIIPAQNWNNYMGNMNPAMPTGFLGSNLVYDFMNPNESFSGGQAISSTLPDRPDQPECRYFMSTGTCKYGSDCKFHHPKERIAQSPINPLGLPLRPGQAICSYYRIYGICKFGPTCKFDHPVLTIPQNYGLTSPALSVLNSSIISNPRELSTVKPPETSPSKLSSDKLKHFDDTKATTEDSPKQADTTSNSESLHE. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00699 414 PANTHER PROTEIN PHOSPHATASE RELATED 21 365 - -
Seca7g00699 414 MobiDBLite consensus disorder prediction 1 20 - -
Seca7g00699 414 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Seca7g00699 414 MobiDBLite consensus disorder prediction 1 22 - -
Seca7g00699 414 MobiDBLite consensus disorder prediction 381 398 - -
Seca7g00699 414 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Seca7g00699 414 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Seca7g00699 414 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Seca7g00699 414 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Seca7g00699 414 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Seca7g00699 414 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Seca7g00699 414 SUPERFAMILY CCCH zinc finger 274 299 IPR036855 GO:0046872
Seca7g00699 414 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Seca7g00699 414 Gene3D - 120 169 - -
Seca7g00699 414 MobiDBLite consensus disorder prediction 399 414 - -
Seca7g00699 414 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Seca7g00699 414 Gene3D - 269 343 - -
Seca7g00699 414 Gene3D - 45 119 - -
Seca7g00699 414 MobiDBLite consensus disorder prediction 367 414 - -
Seca7g00699 414 SUPERFAMILY CCCH zinc finger 312 339 IPR036855 GO:0046872
Seca7g00699 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Seca7g00699 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 339 IPR000571 GO:0046872
Seca7g00699 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Seca7g00699 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
Seca7g00699 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Seca7g00699 414 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Seca7g00699 414 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872
Seca7g00699 414 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Seca7g00699 414 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00699 Seca-Chr7 8170865 8175066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00699 1 350 C3H Transcription Factor Family AT1G04990 52.762 8.34e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca7g00699 zf-CCCH 1.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00699 - - vra:106765262 728.013