Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00694 ATGTGTAGGAAGATCCAACTCAGTATCACTGATCACAACACCGTTGATGATGGTGGCTGTGGCAATATGGACGGTGAGGATCTCTTCATCCCACCCCTCAATTTTGCCATGGTTGATAACGGCATTTTCCGCTCTGGTTTCCCTGAACCCGCCAACTTCTCCTTCCTCCAAACCCTTGGCCTCCGCTCCATCATATATTTGTGTCCTGAACCATATCCGGAGGCTAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCAGTTTGGGATTGAGGGTCATAAGGAACCTTTTGTAAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTCCTTGATGTGAGGAACCATCCAGTTATAATTCATTGTAAGAGAGGAAAGCACCGAACAGGTTGTTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCTGTGTTTGATGAGTACCAGCGCTTTGCAGCTGCGAAAGCAAGAGTTTCAGATCAGAGATTGGATTAA 516 0.4477 MCRKIQLSITDHNTVDDGGCGNMDGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYQFGIEGHKEPFVNIPEDTIREALKVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRLD. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00694 171 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 30 170 IPR029021 -
Seca7g00694 171 ProSiteProfiles Dual specificity protein phosphatase domain profile. 34 171 IPR020422 GO:0006470|GO:0008138
Seca7g00694 171 PRINTS Plant and fungal dual specificity phosphatase signature 66 79 IPR020428 GO:0016791
Seca7g00694 171 PRINTS Plant and fungal dual specificity phosphatase signature 85 99 IPR020428 GO:0016791
Seca7g00694 171 PRINTS Plant and fungal dual specificity phosphatase signature 102 116 IPR020428 GO:0016791
Seca7g00694 171 PRINTS Plant and fungal dual specificity phosphatase signature 29 46 IPR020428 GO:0016791
Seca7g00694 171 Pfam Tyrosine phosphatase family 30 169 IPR004861 -
Seca7g00694 171 Gene3D Protein tyrosine phosphatase superfamily 28 170 IPR029021 -
Seca7g00694 171 FunFam probable tyrosine-protein phosphatase At1g05000 28 171 - -
Seca7g00694 171 PANTHER TYROSINE-PROTEIN PHOSPHATASE 29 170 - -
Seca7g00694 171 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311|GO:0016791
Seca7g00694 171 CDD PFA-DSP_Siw14 28 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00694 Seca-Chr7 8037081 8042659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00694 11 170 Protein tyrosine phosphatase (PTP) family AT4G03960 72.500 3.31e-87 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00694 K18045 - gmx:100814279 323.553