Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00682 ATGTTAGGTGGAGATCAATCTTTCTCAATAAATCCTTGTCAATGGACATATCACGTTTTCTTGAGTTTTAGGGGACAAGATACACGTCTAGATTTTACAGATTACCTATATGCTGCGTTGGTGCGAAAGGGAATCATAACATTCCGAGATGACAAACAGCTTCAAAAAGGAGATGTGATTTCGGTTGAACTCTTTCGAGCGATTGAGCAATCCCTCGCTGCGGTTGTTGTTCTCTCCGAGAACTATGCTACTTCCTCTTGGTGTTTGGATGAGCTCCAAAAAATTCTTGAATCAAAAACAGAAATTTTCCCTGTTTTCTATGGGGTCAGTCCTGATGACGTGGAACATCAGATCAGAAATAGTTTTGCTGAGGCTTTTAGAAAACATGATAGGAGATATGATAGAGAGAAGGTGCAAAAGTGGAGAGACTCCTTGAAAGAAGTTGCAGGCATACGACCTCGCTGGGAGTCCAAGAATTTACACGAAACAGAGCTCATTGAAAATATTGTTGAATCGGTATGGACAAAACTCCGTCCTAAAATGCCGTCTTACCAGGATGGGTTAGTTGGAATTGACTCAAGAGTTAAAAGAATGGATTCACTTTTGAGGATAGAATCAAAGGAGGTTCTCTTTAATGGAATATGGGGCATGGGTGGCATGGGAAAGACAACTCTAGCAAGAGTTGTCTTTAAGAATATCAAAGGCCAGTTTGATTTTAGTTGCTTCCTTGACAATGTTAGAGAGAATTCTAGAGAAGGAGATGGTATAATTCACTTACAAAATAAACTTCTTTCTCAATTGAAAATAAAAGGCTTAGAAATTAGAGATTTGGATGAAGGAAAGAACACAATAAGAAACCTTTTGTCCAAGAAGAAAGTTCTCCTTGTGATTGATGATGTTGATGACATAAGTCAACTAGAGAGTTTGGTTGAGAGAGAGTGGTTTGGCCCTGGGAGCAGAGTTATAATAACAACAAGAGACATACATGTACTAACATCACATGGAGTAGTAGAAAGTTATAAAATTGATGCCTTAAATTCAAATGAGTCCCTTCAACTCTTGAGTCAAAAGGCCTTTAAAAGAGATCAACTACATGAGCATTATTTGGAGTTGTCAAAAGCTGTTGTTCACTATGCTGGAGGCCTTCCTTTAGCCCTTAAGTTATTGGGTTCATTTCTATGTGGAAGAAGTGAATCTCAATGGAAAGAAGTTGTGGACATGATAAAAGATGTACCACCTATTGATATTGGGAGGATAAAAGAGCTTGTCACACAAATACTTCAAATTTGTGACCGTTATCCACCAATCGGAATTGAATTTTTAATTGAAAAATCATTGGCAACTTATGATGAATTTACTTTGGGCATGCATGACTTGCTTCAAGAAACAGGAAGGGAAATTGTCTTTGAGGAATGTCCTATAGATCCTAGCAAACGTAGTAGGCTGTGGTCTCTGAAGGATATTGATCAAGTACTAAAATATAGTAAGTCAAATGAGTCGGTTCAAGGCATAGTTGTGAACTCATCCACAAAGCCATATGAAGCAATATGGGATCCCGAAGCTTTCTCAAGGATGTATAATCTTAAATTTCTAATCATAAATCAGAGTATACAATTTCCTCGTGGCCTCAAATGTCTTTGCAGTTCATTGAGATTTCTACAGTGGATGGAGTGTCCTTTAGAAGCTCTGCCAGATGGTGTGCGGCTAGATGAAGTTGTAGAGTTGAAAATACATGACAGCAAGATTAAAAAGATTTGGAGTGAAACTCAATTTTTCGCAAAGCTGAAGTTCATTGATATGAGTTTCTCCAAATATCTAATTCAAACTCCAATAGTTTCTGGGGCTCCATGTCTAGAAAGGATGCTTCTTATAGGTTGTACAAACCTTGTTGAGGTTCATCAATCTGTTGGACAACACAAGAAGCTTGTTGTGTTAATGTTGAGTGGTTGCAAAAATCTTCGTATCCTTCCAAGAAAATTTGAGATGGATTCTTTGGAGGAGTTGATTCTTTCTGGCTGCTCAAAAGTTAAAAAGCTCCCTGAGTTTGGAAAAACTATGAAATGTTTATCACTGCTTGATTTGGAGAATTGCAAGAATCTTCTCTGCTTACCAAATTCCATTCACAATTTGAAGTCTCTTAGAAAATTACATGTTTCTGGTTGCTCAAAATTTTCTAGGCTCCCCAACAATATCAATGAAAATGAGTCTTTGGAGGAGATTGATGTGAGTGGGACTGCAATAAGAGAAATTACTTTATCCAAAATCCGTCTAGAAAATCTCAAAGTGCTCTCATACGGTGGAAGGAAAGAACTACCATCCAAATCAAGGGACTTACTTTTAAAGATCTCAAAGTTTATAAGGCACCCTAATCCAAAGGAGTTGATCTTGCCTCCTCTCTCATCCTTATTTGCCTTGACCTCCTTGAATTTAAGTTATTGTAACCTTAATGATGAATCAATTCATGATCTTGGTTCCTTAACATTGTTGCAAGAACTAAATCTAAGTGGGAACAATTTTGTTAACCCACCTACTCATTGCATCAGTAATCTTTCCATGTTACAGATTTTGACCTTAACTGATTGCCAAAGGCTTGAGTCGTTGCCTATGCTTCCACCAAATGTTCAATCCCTATATACAACTAATTGTACTCAACTCAAGCCCTTAAATTTGGATGAACAAATGCTGTGGAAAATCTTTGAGTCACATTTACATTTGGATCAGATGGACTATTTGCCAGAGCTTTGGTTCATCATACCGGGGAGTGAAATTCCACCATGGTTTGAAAATCAAGACTCCTTTCAAATTGATCCATCACAGCAACCATATAACAAGTTGGGTTGTGATTCAGTTACATCAATAAAAGTGGAAGTACCAAACCATTGTAAATCAAGTGAATGGTGGGGAATTGCAGTATGCTTAGCATTGGAATCGTTACATATGGAGGTGTCATCTCCATCTAACCATCATGTGAATGAGCTAGAGTGCGTTTATTATTGGGTCTGTAAAGCTCCTGATCGAGAACCTGACCCGAATTTTCCGATTGCATCCAAATATGGGTCCTTGGTTTATGAATTCAATGATCCTTACATCCATATTTTGTTCTTGACTAGTGAACATGTATATATCCAACATTATCTAAGTGGGGAGCAAAGCCAACTTCAATTGATTTTTTATGTGGTGAATCTTTCAAAGCGTTGGAAGTCAACAATAACGAAGTGTGGGTGCCGTGTAATATGTAAGGAAGATATTGAAAATTGGCACAAGGACTTGTATTGTACTCATTTGTTTTCAGCGAATCAAGATTGA 3306 0.3766 MLGGDQSFSINPCQWTYHVFLSFRGQDTRLDFTDYLYAALVRKGIITFRDDKQLQKGDVISVELFRAIEQSLAAVVVLSENYATSSWCLDELQKILESKTEIFPVFYGVSPDDVEHQIRNSFAEAFRKHDRRYDREKVQKWRDSLKEVAGIRPRWESKNLHETELIENIVESVWTKLRPKMPSYQDGLVGIDSRVKRMDSLLRIESKEVLFNGIWGMGGMGKTTLARVVFKNIKGQFDFSCFLDNVRENSREGDGIIHLQNKLLSQLKIKGLEIRDLDEGKNTIRNLLSKKKVLLVIDDVDDISQLESLVEREWFGPGSRVIITTRDIHVLTSHGVVESYKIDALNSNESLQLLSQKAFKRDQLHEHYLELSKAVVHYAGGLPLALKLLGSFLCGRSESQWKEVVDMIKDVPPIDIGRIKELVTQILQICDRYPPIGIEFLIEKSLATYDEFTLGMHDLLQETGREIVFEECPIDPSKRSRLWSLKDIDQVLKYSKSNESVQGIVVNSSTKPYEAIWDPEAFSRMYNLKFLIINQSIQFPRGLKCLCSSLRFLQWMECPLEALPDGVRLDEVVELKIHDSKIKKIWSETQFFAKLKFIDMSFSKYLIQTPIVSGAPCLERMLLIGCTNLVEVHQSVGQHKKLVVLMLSGCKNLRILPRKFEMDSLEELILSGCSKVKKLPEFGKTMKCLSLLDLENCKNLLCLPNSIHNLKSLRKLHVSGCSKFSRLPNNINENESLEEIDVSGTAIREITLSKIRLENLKVLSYGGRKELPSKSRDLLLKISKFIRHPNPKELILPPLSSLFALTSLNLSYCNLNDESIHDLGSLTLLQELNLSGNNFVNPPTHCISNLSMLQILTLTDCQRLESLPMLPPNVQSLYTTNCTQLKPLNLDEQMLWKIFESHLHLDQMDYLPELWFIIPGSEIPPWFENQDSFQIDPSQQPYNKLGCDSVTSIKVEVPNHCKSSEWWGIAVCLALESLHMEVSSPSNHHVNELECVYYWVCKAPDREPDPNFPIASKYGSLVYEFNDPYIHILFLTSEHVYIQHYLSGEQSQLQLIFYVVNLSKRWKSTITKCGCRVICKEDIENWHKDLYCTHLFSANQD. 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00682 1101 Pfam TIR domain 17 190 IPR000157 GO:0007165
Seca7g00682 1101 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 179 - -
Seca7g00682 1101 Gene3D Ribonuclease Inhibitor 784 915 IPR032675 -
Seca7g00682 1101 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Seca7g00682 1101 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 681 IPR044974 GO:0006952
Seca7g00682 1101 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 151 IPR035897 -
Seca7g00682 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 423 IPR027417 -
Seca7g00682 1101 Gene3D - 12 177 IPR035897 -
Seca7g00682 1101 PRINTS Disease resistance protein signature 684 700 - -
Seca7g00682 1101 PRINTS Disease resistance protein signature 211 226 - -
Seca7g00682 1101 PRINTS Disease resistance protein signature 287 301 - -
Seca7g00682 1101 PRINTS Disease resistance protein signature 379 393 - -
Seca7g00682 1101 Pfam NB-ARC domain 199 410 IPR002182 GO:0043531
Seca7g00682 1101 SUPERFAMILY L domain-like 456 911 - -
Seca7g00682 1101 Gene3D Ribonuclease Inhibitor 509 661 IPR032675 -
Seca7g00682 1101 Gene3D Ribonuclease Inhibitor 662 736 IPR032675 -
Seca7g00682 1101 Gene3D - 178 339 IPR027417 -
Seca7g00682 1101 SMART till_3 16 151 IPR000157 GO:0007165
Seca7g00682 1101 Gene3D - 344 433 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00682 Seca-Chr7 7674138 7679866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00682 17 753 WRKY Transcription Factor Family AT4G12020 29.864 2.19e-81 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00682 - - gmx:100799850 1511.89