Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00678 ATGTTGCTGCAATTTCCAGTTGCTGCAATTTTCACTGTTCCTCAAGACCAAAACAATGAAGCAAGTGCTTTGTTAGCATGGAAAGACACGCTTGACAATCAAAACACAAGTTTGTCTTCTTGGACCTCAGGTGCCAGTCCCTGCACATGGGAAGGAATCATTTGTGGTGAATCCAACTCTGTTTCCACTATAAATGTTGCAAATTTTGGACTAAAAGGTACCCTTCTCAGTCTTAACTTCTCATGCTTTCCTAAGCTGCTCATTTTGGATATAAGTAACAACTCCTTTCATGGAAATATTCCCCACCAAATTAGTAACTTGTCTAGAATTTCTGAATTGAGAATGGGTGATAATTTTTTAAATGGTTCCATCCCCAAAGAAATAGGGGCACTAAGGAATCTAAGTGAGCTTCACATTCCTAGATGTAATCTCACTGGCCCAATCCCTGTTTCCATAGTGAAGCTGGCCAATTTGTCATACATAGATTTAGGAAATAACCAACTTTCTGGTCACATTCCTCAGCAGATTGGAGAGATGAGGAATTTGAAGTATATATTGTTTAGATCAAATGGACTTTTGGGTCCAATTCCCTCAACAATTGGAATGTTGACAAATCTTGTTGAGCTTGATTTGTCAGATAATGTCCTCTCTGGTACAATTCCTTCACTGAGAAACTTGAGAAATTTAGAACAACTTTACTTCCATAACAACAGTCTCTCTGGGCCTATTCCTGAGGAAATTGGAAAACTCTATTCTCTCACAACAATCCAATTGTTATTCAATAACTTGTCTGGGCCAATACCACCCTCCATAGGAAACTTGGTCAATTTGAATTCTCTTAAACTTGGAAATAACAAACTTTATGGATCAATTCCATCTTCTCTTGGAAACTTGACAAAGCTCTCCATGTTGTCCATGAACCATAACAGACTTTCTGGATCAATTCCTACCACCATGGGAAACTTGGTCAACTTAGAGGGGCTTAACCTTGCAGAAAACAAACTCTCTGGACCTATTCCTTCCTCCTTTGGAAATATGACAAAGCTCAACTTTCTATTACTCTATGACAACAATTTTACTGGTAGGATCCCATCATCAATGAATAACCTTACCAATTTGATAAGCTTGCAACTAAGTACGAATGGTTTCATTGGCCCTTTGCCACAAGAAATTTGCCATGGTCAGTTGCTTCAAAAATTTGCTGCAAATGATAATTATTTCACTGGTCAAGTTCCAAGAAGCTTGAAGAATTGCTCTAGCCTTATTAGACTCAATCTTGTTGAAAACTTCTTGGTTGGAAATATATCAGATGATTTCGGTGTATATCCAAAATTAGACTACATTGATCTTAGTAACAATAATTTTTTTGGCCACCTTTCACCAAATTGGGCCAAGTGTCCTAGTCTTACAAGCCTTTCAATGTCCAATAACAATTTATCAGGTGGTATACCACCAGAGCTAGGCCAAGCACCCAACTTACAAAGACTTCAACTTTCTTCAAATCATCTAAATGGGAAACTTCCAAAAGAACTTGGTAACTTGACCACATTGTTTGAACTCTCCATAAGTGGCAATGAACTTTCAGGCAATATTCCTATAGAAATAGGATCTTTGCTAGAACTTCAACGTTTGGAGCTGGCAGAAAATAATTTAAGAGGTCCAATTCCAAAACAAGTTGGAAAGTTACTCAATTTATTTCAATTGAATTTGAGCAAAAATAATTTCATAGGAAACATTCCATCTGAATTTGGGCAACTGCAATCTCTTCAAAATCTTGATCTCAGTGGGAATTTGTTGAATGGACAAATACCAGAAATGCTTGGAAAGTTGAGAAAATTGGAAACATTGAACCTCTCCCACAATAATCTCTCTGGCACAATTCCATCTGAATTTGAGGATATGTTCAGCTTGACACATGTTGATATATGTAACAATCAATTAGAAGGTCCAATTCCTAACAATCCAGCCTTTCTTAAGGCTTCATTTGATGCATTGAAAAATAACAAAGGCTTGTGTGGTAATGTTTCTAGCTTGGTCATTTGTCAACAGTTGAGTCATAACCAGAAGAAAAAACATGTCATTCTGTTGGCATCATTCCTTACTTTGGGTGCTCTATTGCTAGTAGTAGTGTTTGTGGCTGGACTTTCTTTATGTATTCATTGGCAAAGAGCAAGAAAAATAATCCAAAAGCAGGATAAAGAAGAAGAACATACTCAAGATCATTTTTCCATATTGAGTCATGATGGAAAAATAGTGTATGAAAATATCATTGAAGCCACAGAGGATTTTGATGACAAATATCTCATTGGAAAAGGAGGGTCTGGATCTGTTTACAAGGCTAACTTACCCTGTGGCAAGGTTTTTGCTGTGAAAAAACTTCATGATACAGTTGATGGAGAAATGCCTAAAGCTTTTACTAATGAGGTTCGAGCCTTGACAGAAATCAAACATCGTAACATTGTCAAGTTGTGTGGATTTTGTTCCCATCCACGCTACCCTTTTCTACTTTATGAGTTTGTAGAAGGAGGTAGCTTGGATAAAGTACTAAACATTGATGCACAAGCAATAATGTTTGATTGGGATAAGAGGGTGAATGTTGTCAAAGGTGTGGCAAATGCTTTGTTCCATATGCATCATGGTTGCTCTCCTCCTATAATTCATCGTGACATATCAAGCAAAAATGTTCTTTTAGATTCAGCATATGAAGCTCACATCTCAGACTTTGGAATAGCTAAGATTTTGAATCATGATTCACGTAGTTCAACCACTTTTGCAGGCACCTATGGATATGTTGCACCAGAACTTGCTTATAATATTGAAGCAAATGAGAAATGTGATGTCTTTAGTTTTGGGGTGCTTTCTTTGGAAATAATGATGGGAAAGCATCCAGGAGAACTCATTTCTTCATCGTTTTCATCCCCTGAAATGGCAGTAACATCTAAGTTGCTATTGAAGGATGTGTTGGACCAACGACTTCCCCATCCAATGAAGTCCTCAATTGTTAAAGAGGTAGTCTTGATTGCAAGAATAACATTTGCATGCTTGAGTAAAAGTCCAGAGTCTCGCCCCACCATGGAACAAGTGTATAAGGAATTTGTGATGCCAACATCACCTTTAGAGAATCCATTCCCCACAGTCACACTTGGACAACTCCTAAATAATTGA 3165 0.3747 MLLQFPVAAIFTVPQDQNNEASALLAWKDTLDNQNTSLSSWTSGASPCTWEGIICGESNSVSTINVANFGLKGTLLSLNFSCFPKLLILDISNNSFHGNIPHQISNLSRISELRMGDNFLNGSIPKEIGALRNLSELHIPRCNLTGPIPVSIVKLANLSYIDLGNNQLSGHIPQQIGEMRNLKYILFRSNGLLGPIPSTIGMLTNLVELDLSDNVLSGTIPSLRNLRNLEQLYFHNNSLSGPIPEEIGKLYSLTTIQLLFNNLSGPIPPSIGNLVNLNSLKLGNNKLYGSIPSSLGNLTKLSMLSMNHNRLSGSIPTTMGNLVNLEGLNLAENKLSGPIPSSFGNMTKLNFLLLYDNNFTGRIPSSMNNLTNLISLQLSTNGFIGPLPQEICHGQLLQKFAANDNYFTGQVPRSLKNCSSLIRLNLVENFLVGNISDDFGVYPKLDYIDLSNNNFFGHLSPNWAKCPSLTSLSMSNNNLSGGIPPELGQAPNLQRLQLSSNHLNGKLPKELGNLTTLFELSISGNELSGNIPIEIGSLLELQRLELAENNLRGPIPKQVGKLLNLFQLNLSKNNFIGNIPSEFGQLQSLQNLDLSGNLLNGQIPEMLGKLRKLETLNLSHNNLSGTIPSEFEDMFSLTHVDICNNQLEGPIPNNPAFLKASFDALKNNKGLCGNVSSLVICQQLSHNQKKKHVILLASFLTLGALLLVVVFVAGLSLCIHWQRARKIIQKQDKEEEHTQDHFSILSHDGKIVYENIIEATEDFDDKYLIGKGGSGSVYKANLPCGKVFAVKKLHDTVDGEMPKAFTNEVRALTEIKHRNIVKLCGFCSHPRYPFLLYEFVEGGSLDKVLNIDAQAIMFDWDKRVNVVKGVANALFHMHHGCSPPIIHRDISSKNVLLDSAYEAHISDFGIAKILNHDSRSSTTFAGTYGYVAPELAYNIEANEKCDVFSFGVLSLEIMMGKHPGELISSSFSSPEMAVTSKLLLKDVLDQRLPHPMKSSIVKEVVLIARITFACLSKSPESRPTMEQVYKEFVMPTSPLENPFPTVTLGQLLNN. 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00678 1054 Pfam Leucine Rich Repeat 612 632 IPR001611 GO:0005515
Seca7g00678 1054 SUPERFAMILY L domain-like 41 289 - -
Seca7g00678 1054 FunFam MDIS1-interacting receptor like kinase 2 isoform A 293 390 - -
Seca7g00678 1054 PANTHER LEUCINE RICH REPEAT KINASE 2 320 1038 - -
Seca7g00678 1054 PRINTS Leucine-rich repeat signature 610 623 - -
Seca7g00678 1054 PRINTS Leucine-rich repeat signature 206 219 - -
Seca7g00678 1054 SUPERFAMILY L domain-like 359 458 - -
Seca7g00678 1054 Gene3D Transferase(Phosphotransferase) domain 1 840 1037 - -
Seca7g00678 1054 SMART LRR_sd22_2 298 324 - -
Seca7g00678 1054 SMART LRR_sd22_2 586 618 - -
Seca7g00678 1054 SMART LRR_sd22_2 203 231 - -
Seca7g00678 1054 SMART LRR_sd22_2 155 170 - -
Seca7g00678 1054 SUPERFAMILY Protein kinase-like (PK-like) 744 1031 IPR011009 -
Seca7g00678 1054 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 198 292 - -
Seca7g00678 1054 FunFam Leucine-rich repeat receptor protein kinase MSP1 726 839 - -
Seca7g00678 1054 Gene3D Ribonuclease Inhibitor 16 171 IPR032675 -
Seca7g00678 1054 ProSiteProfiles Leucine-rich repeat profile. 205 227 IPR001611 GO:0005515
Seca7g00678 1054 ProSitePatterns Tyrosine protein kinases specific active-site signature. 885 897 IPR008266 GO:0004672|GO:0006468
Seca7g00678 1054 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 391 685 - -
Seca7g00678 1054 SUPERFAMILY RNI-like 233 654 - -
Seca7g00678 1054 FunFam MDIS1-interacting receptor like kinase 2 840 1038 - -
Seca7g00678 1054 ProSitePatterns Protein kinases ATP-binding region signature. 769 792 IPR017441 GO:0005524
Seca7g00678 1054 Gene3D Ribonuclease Inhibitor 268 366 IPR032675 -
Seca7g00678 1054 SMART LRR_typ_2 370 394 IPR003591 -
Seca7g00678 1054 SMART LRR_typ_2 155 179 IPR003591 -
Seca7g00678 1054 SMART LRR_typ_2 538 562 IPR003591 -
Seca7g00678 1054 SMART LRR_typ_2 586 609 IPR003591 -
Seca7g00678 1054 SMART LRR_typ_2 274 298 IPR003591 -
Seca7g00678 1054 SMART LRR_typ_2 491 514 IPR003591 -
Seca7g00678 1054 SMART LRR_typ_2 226 250 IPR003591 -
Seca7g00678 1054 SMART LRR_typ_2 322 345 IPR003591 -
Seca7g00678 1054 SMART LRR_typ_2 610 633 IPR003591 -
Seca7g00678 1054 SMART LRR_typ_2 203 225 IPR003591 -
Seca7g00678 1054 SMART LRR_typ_2 466 490 IPR003591 -
Seca7g00678 1054 Gene3D Ribonuclease Inhibitor 367 683 IPR032675 -
Seca7g00678 1054 FunFam Nuclear pore complex protein NUP107 17 172 - -
Seca7g00678 1054 Gene3D Ribonuclease Inhibitor 172 267 IPR032675 -
Seca7g00678 1054 Pfam Protein kinase domain 765 1031 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00678 1054 Pfam Leucine rich repeat N-terminal domain 18 55 IPR013210 -
Seca7g00678 1054 ProSiteProfiles Leucine-rich repeat profile. 612 633 IPR001611 GO:0005515
Seca7g00678 1054 Gene3D Phosphorylase Kinase; domain 1 723 839 - -
Seca7g00678 1054 ProSiteProfiles Protein kinase domain profile. 763 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00678 Seca-Chr7 7559826 7563435 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00678 20 959 Receptor kinase-like Gene Family AT4G08850 44.770 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca7g00678 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00678 - - gmx:100797314 1219.91