Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00676 ATGTCCACAAAGCTTGTACCATTTTCGTTGATTCTCATTACGTTTTTCTGTTCACTTTTAAGGCTCTCTTTCTTCCATGTTTCTAGCACATTCATGTTTGCTTCTTTTGCCTTTGCTGCCACTACTGATGATCAAGACAGAGAAGCAAGTGCTCTATTGGAGTGGAAAGCCAGCCTTGATAATCAAAGCCAAGCTTCCTTCTCTTCTTGGACCATAGTTACCACTCCTTGCAATTGGGGGAAAGAAATTGGTTGTGATGAAACCAACTCTGTGACCACCATGAATGTTGCAAATTTTGGACTTAAAGGTACTCTTTTTAGTCTCAACTTCTCATCCTTTCCTATGTTGCTCACTCTGGACATAAGTAACAACTCATTTTATGGAACCATTCCTCAGCATATTGGTAACTTGTCCAGAATTACTCAACTGAAAATGGGTCATAATCTTTTCAGTGGTTCCATCCCTCAAGAAATAGGGGCACTAAGAAGTCTAAGACAGATTGATTTAAGAGGAAATAGACTTTCTGGTTCCATTCCCACAACAATTGGAATGTTGATGAGTCTTGTTAAACTTGATTTGTCAATGAACTCTCTCTCTGGTGCAATCCCTTCAATTAGAAGCTTGAGAAATTTAGAACAACTTGCCCTCTTTAAAAACTGTCTCTCTGGACCTATTCCTGAGGATTTGGGAAGACTCTCATCTCTCATAAGAATCAAGTTGGTATCCAATAATTTGTCTGGGCCAATCCCATCTTCCATAGGAAACTTGGCCAATTTGAGCATTCTTAGACTCTTTGGTAATAAACTTGATGGAACAATACCTTCCACTCTTGGAAACTTGACAAAACTCACCCTTTTGTCCCTGAATATGAACAAGCTTCATGGATCAATTCCTGCTTCATTGGGAAACTTGGTCAATCTAAAGAGGCTTAGCCTCTCAGAAAACTATCTTTCTGGACCTATTCCTTCTACCTTTGGAAATTTGACAAAGCTCACTGGGTTATTACTTTATAATAACAACCTTAATGGTAGCTTTCCAAAGAATAACCTTACCAATTTAGAAACCTTACAACTAAGTGCAAATGATTTCACTGGCCATTTGCCACCACAGATTTGCCTTGGTGGATCACTTGTAAATTTTTCAGCTAACAAGAATCATTTCAGTGGTCCAGTTCCAACAAGCTTGAAGAATTGTTCCAAGCTTTTCAGACTCAACCTTGCAGACAATATGTTGATTGGAAATATTTCAGATGATTTTGGTATATATCCAGATTTAAGGCACATTGATCTGAGTAGCAATAATTTTTATGGCCACATTTTGCCAAATTGGGCAAAAAGCCATAATCTCATTGGCCTATTCATGTCTAACAACAATTTATCTGGTGGTATACCACCAGAACTAGGACAAGCATCAAAGTTACAATCACTTAAACTGTCTTCAAATCATTTGACAGGAAAAATTCCAAAGGAACTTTGTAACTTGACCTCATTGTTTGAACTCCATATAAGTAACAATGAACTTTCAGGCAACATTCCCACAGAAATAGGATCCATGCAGAGACTTAAACACTTGGATCTGGCAGGAAATAATATGAGTGGCTCAATCCCAAAACAGGTTGGAGATCTGCTCAATTTAGTTTTGTTGAATTTGAGCAGGAATAAGTTCATAGGAAGCATTCCCTCTGAATTCAACCACTTGCATTCTCTTGAAAATCTTGATCTTAGTGGAAATTCCTTGAATGGACAAATACCAGAAGCTCTTGGGAAGTTGCAAAAATTGATCACATTGAACCTCTCACACAATAATCTCTCTGGGACCATTCCATCCAATTTGAAGGACATGATAAGCTTGATAATTGTTGACATATCTAACAACCAATTAGAGGGTCCAATCCCTAACAATCCAGCCTTTCTTAGGGATCCATTTGAAGCATTGAGAAATAATAAAGACTTGTGTGGTAATACCTCCCACTTGAAGCCTTGCAGAGAGTTGGCTCACAACACTTATGGTAGAAAGAAAAATGTCTTGATATTGGCACTAGTCCTTACTTTGAGTGTGCTATTTTTGCTAATGTTCATGATTGGAGTTTCATTATGTATTCATTGGGAAAAAGGTAGCAAAAGCCAAAAGCAGGCTAGAAAAGAACAAACTCAAGATCTTTTCTCCATATGGAGTTGTGATGGGAAAATGGTGTATGAAAATATCATTGAAGCCACAGAGGAGTTTGATAACAAATATCTCATTGGAAAAGGAGGATTCGGAACTGTTTACAAGGCTATCTTATCCTCTGGCCAGGTTGTTGCTGTGAAAAAACTTCATGCTGCAGTTGATGGGGAAATGCTCAATTTTAAAGCTTTCAAGAATGAGGTTCAAGTCTTGACAGAAATCAAGCATCGTAACATTGTGAAGTTGTATGGATATTGTCAACATCCACGTTATTCTTTTCTGGTTTATGAGTTCATAGAAGGAGGTAGCTTGGATAAAGTACTAAATAATGATACACAAGCAATGATGTTTGATTGGAACAAGAGGGTGAATGTTGTTAAAGGTGTCACAAATGCTCTATATCATATGCATCATGGTTGTTCTCTTCCTATTATTCATCGTGACTTATCAAGCAAGAATGTTCTTCTAGATTTGGAATATGAAACTCGCATCTCAGATTTTGGAACAGCTAAAATTCTGAATCTTAATTCACACACTTCAACCACATTTGCAGGCACTTATGGATATGCAGCACCAGAGCTTGCTTATACTTTGGAAGTGAATGAGAAATGTGATGTCTTCAGTTTTGGAGTGCTTTCTTTGGAAATAATGATGGGAAAGCATCCAGGAGATCTCATTTCTTCATTGTTGTCATCATCATCTACAACGCCAATTGAATCAAATTTGCTATTGAAGGATGTGATGGACCAACGGCTTCCTCGTCCAATGAGGCCAATTGTTAAGGATGTGATCTTGATTGCAAAAATGGCATTAGCTTGTTTGAATGAAAGTCCACATGCTCGCCCAACTATGGAAGAAGTGTATAACACGTTTGTGATGTCAAAATCACCTATAATGGAGACATTCAATATCATCACACTTGGACAACTTCTAAGTTATTGA 3108 0.3771 MSTKLVPFSLILITFFCSLLRLSFFHVSSTFMFASFAFAATTDDQDREASALLEWKASLDNQSQASFSSWTIVTTPCNWGKEIGCDETNSVTTMNVANFGLKGTLFSLNFSSFPMLLTLDISNNSFYGTIPQHIGNLSRITQLKMGHNLFSGSIPQEIGALRSLRQIDLRGNRLSGSIPTTIGMLMSLVKLDLSMNSLSGAIPSIRSLRNLEQLALFKNCLSGPIPEDLGRLSSLIRIKLVSNNLSGPIPSSIGNLANLSILRLFGNKLDGTIPSTLGNLTKLTLLSLNMNKLHGSIPASLGNLVNLKRLSLSENYLSGPIPSTFGNLTKLTGLLLYNNNLNGSFPKNNLTNLETLQLSANDFTGHLPPQICLGGSLVNFSANKNHFSGPVPTSLKNCSKLFRLNLADNMLIGNISDDFGIYPDLRHIDLSSNNFYGHILPNWAKSHNLIGLFMSNNNLSGGIPPELGQASKLQSLKLSSNHLTGKIPKELCNLTSLFELHISNNELSGNIPTEIGSMQRLKHLDLAGNNMSGSIPKQVGDLLNLVLLNLSRNKFIGSIPSEFNHLHSLENLDLSGNSLNGQIPEALGKLQKLITLNLSHNNLSGTIPSNLKDMISLIIVDISNNQLEGPIPNNPAFLRDPFEALRNNKDLCGNTSHLKPCRELAHNTYGRKKNVLILALVLTLSVLFLLMFMIGVSLCIHWEKGSKSQKQARKEQTQDLFSIWSCDGKMVYENIIEATEEFDNKYLIGKGGFGTVYKAILSSGQVVAVKKLHAAVDGEMLNFKAFKNEVQVLTEIKHRNIVKLYGYCQHPRYSFLVYEFIEGGSLDKVLNNDTQAMMFDWNKRVNVVKGVTNALYHMHHGCSLPIIHRDLSSKNVLLDLEYETRISDFGTAKILNLNSHTSTTFAGTYGYAAPELAYTLEVNEKCDVFSFGVLSLEIMMGKHPGDLISSLLSSSSTTPIESNLLLKDVMDQRLPRPMRPIVKDVILIAKMALACLNESPHARPTMEEVYNTFVMSKSPIMETFNIITLGQLLSY. 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00676 1035 ProSiteProfiles Protein kinase domain profile. 742 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00676 1035 FunFam Predicted protein 248 347 - -
Seca7g00676 1035 ProSitePatterns Tyrosine protein kinases specific active-site signature. 866 878 IPR008266 GO:0004672|GO:0006468
Seca7g00676 1035 PRINTS Leucine-rich repeat signature 188 201 - -
Seca7g00676 1035 PRINTS Leucine-rich repeat signature 566 579 - -
Seca7g00676 1035 Pfam Leucine rich repeat N-terminal domain 46 79 IPR013210 -
Seca7g00676 1035 SMART LRR_typ_2 208 232 IPR003591 -
Seca7g00676 1035 SMART LRR_typ_2 113 137 IPR003591 -
Seca7g00676 1035 SMART LRR_typ_2 542 565 IPR003591 -
Seca7g00676 1035 SMART LRR_typ_2 494 518 IPR003591 -
Seca7g00676 1035 SMART LRR_typ_2 566 589 IPR003591 -
Seca7g00676 1035 SMART LRR_typ_2 304 327 IPR003591 -
Seca7g00676 1035 SMART LRR_typ_2 256 280 IPR003591 -
Seca7g00676 1035 SMART LRR_typ_2 590 613 IPR003591 -
Seca7g00676 1035 SMART LRR_typ_2 350 374 IPR003591 -
Seca7g00676 1035 SMART LRR_typ_2 161 185 IPR003591 -
Seca7g00676 1035 Gene3D Transferase(Phosphotransferase) domain 1 821 1023 - -
Seca7g00676 1035 SUPERFAMILY Protein kinase-like (PK-like) 723 1013 IPR011009 -
Seca7g00676 1035 Gene3D Phosphorylase Kinase; domain 1 702 820 - -
Seca7g00676 1035 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 350 665 - -
Seca7g00676 1035 Gene3D Ribonuclease Inhibitor 44 205 IPR032675 -
Seca7g00676 1035 Pfam Leucine Rich Repeat 306 328 IPR001611 GO:0005515
Seca7g00676 1035 Pfam Leucine Rich Repeat 592 612 IPR001611 GO:0005515
Seca7g00676 1035 Pfam Leucine Rich Repeat 472 494 IPR001611 GO:0005515
Seca7g00676 1035 FunFam Nuclear pore complex protein NUP107 45 204 - -
Seca7g00676 1035 SUPERFAMILY L domain-like 262 531 - -
Seca7g00676 1035 Gene3D Ribonuclease Inhibitor 206 348 IPR032675 -
Seca7g00676 1035 Gene3D Ribonuclease Inhibitor 349 664 IPR032675 -
Seca7g00676 1035 SUPERFAMILY L domain-like 64 296 - -
Seca7g00676 1035 SUPERFAMILY L domain-like 518 635 - -
Seca7g00676 1035 PANTHER LEUCINE RICH REPEAT KINASE 2 278 1018 - -
Seca7g00676 1035 FunFam MDIS1-interacting receptor like kinase 2 821 1019 - -
Seca7g00676 1035 ProSitePatterns Protein kinases ATP-binding region signature. 748 771 IPR017441 GO:0005524
Seca7g00676 1035 Pfam Protein kinase domain 744 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00676 1035 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Seca7g00676 1035 Pfam Leucine rich repeat 520 579 IPR001611 GO:0005515
Seca7g00676 1035 FunFam Leucine-rich repeat receptor protein kinase MSP1 705 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00676 Seca-Chr7 7542556 7545957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00676 27 914 Receptor kinase-like Gene Family AT4G08850 43.939 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca7g00676 Pkinase 3.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00676 - - gmx:100800924 1276.92