Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00634 ATGACTAGAACTAGTAGCATCATTACTATCACACTCTTGTTGATTATTTCCTTCTTGTATGGTGCTTTTGCTCTGCTCTCTGATGGGGTGACTCTCTTGTCACTCTTGACGAGCTGGACCTTTGTTCCTTCTATCATCAGCTCAAGCTGGAATGCCTTTGATTCCATTCCATGTTCATGGGTTGGAGTTCAATGCGACCATGCCCACAATGTGATCTCTCTTAACCTCACTCATCAAGGGATTTTTGGTCAACTTGGACCACAAATTGGAAACTTGTATCACTTGCAGACCCTTGTGTTGTTGGGTAATGGTTTCTCAGGAAAAATACCTTCAGAGTTAAGTAACTGTAGTTTACTTGTGTATTTAGACCTTTCTGGAAACAACTTCAGTGGACAGATACCATATAGCTTCAAAAAGTTGCAAAATTTACAGTATTTGAGCTTGTCTTCTAATCTGTTGACCCGTGAAATTCCAGATTCCTTGTTTCAAATACCTTCTCTGGAAGAACTGAGGCTGCATAGTAACCTTCTTAGTGGTCCTGTCCCAACCAATATTGGGAACTTGACCAAACTATTGAGGTTGTATCTATATGGTAATCAGTTGTCAGGGACTATTCCTCCATCCATTGCCTTTTTGGGACTTCCTTTGGAGATGACAAATCTCAAGCATCTAAAAAATATCTCATTGTTTGACAACCAGTTCTCTGGAGTCATACCTCAAAGCTTGGGAATCAACAGCAGCTTGGTGAAGGTGGACTGTATGAATAATAAGTTCACTGGTAATATCCCACCCAATCTTTGCTTTGGAAAGCAATTGATTGAGCTCAATATGGGAATTAATCAACTTCAAGGTGGCATACCTTCTGATGTAGGGAGATGTGTTACTCTAAGGAGGTTGATTCTCAAAGAAAATAATTTCACTGGTTCTCTGCCTGATTTTGAAAGTAAGATGAACCTCATATACATGGACATAAGCAAGAACAATATCAGTGGACTAATTCCATCAAGTTTGGGAAATTGCAGAAACCTCACTTACATTAACTTGTCAATGAACAAATTTACTGGGCCAATACCACCTCAGTTTGGAAAGCTTGTGAATCTTGTGATTTTGAATCTTGCTCACAACAACTTGGAAGGTACTTTGCCACCTCAGCTATCAAATTGTACTAAAATGGATCATTTTGATGTGGGATTCAATTTCCTAAATGGCTCACTCCCATCAAGTTTGAGTAGTTGGACATGGATAACCACATTGATTTTAAGAGAGAATCATTTTTCAGGGGGTATCCCGAACTTTTTGGCAAAATTTAACAACCTTCGTGAGTTACAACTTGGTGGAAATTTGTTTGGAGGCAAAATTCCTCAATCAATAGGAAAAATGCAGAATCTGTTTTATGGATTGAATCTGAGTGCTAATGGATTGACAGGTGACATTCCTACAGAAATTAGGAAGCTAGAACTGTTGCAAAGTCTGGATATATCCTTGAACAATTTGACAGGAAAGATAGATTCTCTTGAAAGTCTTATTTCATTAATTGAGGTCAATATTTCTTACAATTTCTTTGATGGCCCTGTACCTATGGGGCTAATCAAGTTATTGAATTCCTCACCATCATCATTCATGGGTAACCCTCTCCTATGTGTTAGTTGCTTGAGTTGCGTTAAAACTAGTTATGTGAAGCCTTGTGTCTACAAATCAACTGATCACAAAGGTATCAGTAAATTTCAAATTTTGGTTATAGAACTTGGATCCTCAATATTTATTTCTGCCATGCTAATAATAATGGTTCTAATGTATCTCCATAGAAAGGAATTGAAAAGGGCCTATGCTCTTAAGCAATGGTATTTTAGTGAATGGAACCCGTCTTCCATTCACCACCAAGTGTTGAAGGCTACAGAACATCTAAATGATCGGTATATTATTGGCATAGGAGCCTATGGTGTTGTATACAAGGCCCAACTGGGTCCGAAACAGGTTTATGCTGTAAAGAAGGTTTCTTTTGAAAGAAACAAGGAGAAGTGTATAAGCATCATGCAAAATGAAATTCAAACCCTTGGAATGATTAGGCACCGAAATTTGGTCAAAGTCACTAACTTCTGCATTGGACCTAACTATGGCTTAATCTTATATGAGTACATGGAAAATGGAAGCCTTCATGATATTTTACATGAAATGGAACCCCCACCACCCTTAAAGTGGAATGTCCGGTTTAAGATAGCTGTTGGAATTGCTGAAGGACTAGCATATCTGCATTATGATTGTATCCCACCTATATTGCACAGAGACATCAAGCCAAGGAATATACTTATCAATGCTGATATGAAGCCTCTTATAGCTGATTTTGGTAGTGCCCTGTACAGGGATCTGTCTGAAGATTCTTATACCCATTCTAAAACCAGGCTAAATCTTTCATCACATGTCGCTGGTACCCCTGGCTATATTGCACCAGAGAATGCATATGCAATAGTTCAGAGCAGAAAGTCTGATGTATATAGCTATGGGGTTGTTTTGCTTGAGCTAATAACCAGAAGGAAAGTATTAATTCAATCTTTGAATAATGAGGCAGAGGTGACCACTTTAGTACGTTGGGCTAGATCTATATGGTTGGAAACAGGCAAAATTGAGAAGATTGCTGATCCATATCTTGCAAGTGCATTTCCCAATTCAGTAGCACTAGCCAACCATGTCACTGCAGTGTTTTTGTTGGCATTACAATGCACAGAGAGGGATCCACGTCAGAGACCAACCATGAAAGATGTTATTGGCTTTTATACAAAGGACGTGTTCCAGTTGAGGTGTGATGATGTGGTTTATGGTGATGAAGTTGCTGTTGATGTAGCACCACAACCATGTGACTCTCTTAATCTCTTATCTGATGTTCCTGTTGTTAGTATTGACCACCATCTCCATGGAGAAAGTAGTAGTGCTGCAACCCTGAGACAGAGAAGTTACATTTAA 2958 0.3888 MTRTSSIITITLLLIISFLYGAFALLSDGVTLLSLLTSWTFVPSIISSSWNAFDSIPCSWVGVQCDHAHNVISLNLTHQGIFGQLGPQIGNLYHLQTLVLLGNGFSGKIPSELSNCSLLVYLDLSGNNFSGQIPYSFKKLQNLQYLSLSSNLLTREIPDSLFQIPSLEELRLHSNLLSGPVPTNIGNLTKLLRLYLYGNQLSGTIPPSIAFLGLPLEMTNLKHLKNISLFDNQFSGVIPQSLGINSSLVKVDCMNNKFTGNIPPNLCFGKQLIELNMGINQLQGGIPSDVGRCVTLRRLILKENNFTGSLPDFESKMNLIYMDISKNNISGLIPSSLGNCRNLTYINLSMNKFTGPIPPQFGKLVNLVILNLAHNNLEGTLPPQLSNCTKMDHFDVGFNFLNGSLPSSLSSWTWITTLILRENHFSGGIPNFLAKFNNLRELQLGGNLFGGKIPQSIGKMQNLFYGLNLSANGLTGDIPTEIRKLELLQSLDISLNNLTGKIDSLESLISLIEVNISYNFFDGPVPMGLIKLLNSSPSSFMGNPLLCVSCLSCVKTSYVKPCVYKSTDHKGISKFQILVIELGSSIFISAMLIIMVLMYLHRKELKRAYALKQWYFSEWNPSSIHHQVLKATEHLNDRYIIGIGAYGVVYKAQLGPKQVYAVKKVSFERNKEKCISIMQNEIQTLGMIRHRNLVKVTNFCIGPNYGLILYEYMENGSLHDILHEMEPPPPLKWNVRFKIAVGIAEGLAYLHYDCIPPILHRDIKPRNILINADMKPLIADFGSALYRDLSEDSYTHSKTRLNLSSHVAGTPGYIAPENAYAIVQSRKSDVYSYGVVLLELITRRKVLIQSLNNEAEVTTLVRWARSIWLETGKIEKIADPYLASAFPNSVALANHVTAVFLLALQCTERDPRQRPTMKDVIGFYTKDVFQLRCDDVVYGDEVAVDVAPQPCDSLNLLSDVPVVSIDHHLHGESSSAATLRQRSYI. 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00634 985 Gene3D Phosphorylase Kinase; domain 1 600 712 - -
Seca7g00634 985 ProSiteProfiles Leucine-rich repeat profile. 142 164 IPR001611 GO:0005515
Seca7g00634 985 Pfam Leucine rich repeat 319 377 IPR001611 GO:0005515
Seca7g00634 985 Pfam Leucine rich repeat 135 177 IPR001611 GO:0005515
Seca7g00634 985 FunFam Leucine-rich repeat receptor-like protein kinase 27 183 - -
Seca7g00634 985 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Seca7g00634 985 SUPERFAMILY RNI-like 217 545 - -
Seca7g00634 985 Gene3D Ribonuclease Inhibitor 140 214 IPR032675 -
Seca7g00634 985 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 713 926 - -
Seca7g00634 985 Gene3D Transferase(Phosphotransferase) domain 1 713 931 - -
Seca7g00634 985 SMART LRR_typ_2 140 164 IPR003591 -
Seca7g00634 985 SMART LRR_typ_2 188 213 IPR003591 -
Seca7g00634 985 SMART LRR_typ_2 364 388 IPR003591 -
Seca7g00634 985 SMART LRR_typ_2 436 460 IPR003591 -
Seca7g00634 985 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 229 557 - -
Seca7g00634 985 Gene3D Ribonuclease Inhibitor 215 557 IPR032675 -
Seca7g00634 985 Pfam Protein kinase domain 640 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00634 985 Gene3D Ribonuclease Inhibitor 30 139 IPR032675 -
Seca7g00634 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 758 770 IPR008271 GO:0004672|GO:0006468
Seca7g00634 985 Coils Coil 488 508 - -
Seca7g00634 985 ProSitePatterns Protein kinases ATP-binding region signature. 641 664 IPR017441 GO:0005524
Seca7g00634 985 SUPERFAMILY L domain-like 29 311 - -
Seca7g00634 985 SMART serkin_6 635 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00634 985 ProSiteProfiles Protein kinase domain profile. 635 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00634 985 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 291 919 - -
Seca7g00634 985 SUPERFAMILY Protein kinase-like (PK-like) 616 921 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00634 Seca-Chr7 6975283 6978707 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00634 67 921 Receptor kinase-like Gene Family AT1G73080 45.737 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca7g00634 Pkinase 7.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00634 - - tpra:123924637 1252.27