Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00596 ATGCAGGCTATCTGGTTGATGCTGTTTTTGTTGGTGGCTATTGTGTTGGGAAATTCAGATATTGATGCACTCCTTGAACTCAAGAAGAGTATTCAGAATGACCCTTCTGGATTAGTTTTAAATTCTTGGGATTCAAAGTCTTTAGATTCAGATGGGTGTCCTCAGAACTGGTATGGGATATTGTGCACTGAAGGCAGTGTTATATCAATCACTCTGGATAATGCTGGTTTGTTTGGAGAGTTCAATTTCCTTGCCATTAGTGGCCTTACAATGCTCCGGAACTTGTCAGTTGTGAACAACCAGTTCACAGGAAGTATCATACATATTGGTCCAATGAAATCACTTGAATTTCTTGATTTGTCCTGCAACAAGTTTAATGGGTCATTACTCTCTAACTTTGTTGAATTGCATAATTTAGTATATCTGAATCTTTCTTCAAATGAATTTAGTGGTACTCTTTCTATTGGGTTTCACAAACTTGAGCAGTTGAAGTATTTAGATTTGCACACTAATAACTTTTCTGGGGATATTACGCATATCTTATCCCAGATGGGCAGTGTGCTACATGTTGACTTAAGCAGCAACAGGTTTTCTGGGACACTGGATTTGGGACTTGGAGATGACTCCTTTCTTTCCTCAATTCAATATTTAAATGTTAGCTACAATTCCTTGATTGGTGAGCTATTTGCTCATGATGGTATGCCATACCTTGACAATTTAGAGGTCCTTGATGCTAGTAATAATCAGCTAGTGGGTCATATACCTTCCTTCACCTTTGTGGTATCTCTAAGGATTCTTCGACTTGCATGCAACCAGTTGACAGGTTCACTGCCTGAAACTTTATTGAGGGAAAGTTCAATGATGTTGTCTGAGCTGGATCTTAGTCAAAACCAGCTTGAAGGTCCCATTGGAAGTATTACCTCAGTAACTCTCAGGAAGCTTAATATATCTTCAAACAAATTGTCAGGCCCCTTACCTCTCAGGGTAGGCCACTGTGCCATCCTAGATTTGAGTAACAACATGCTGTCAGGTAATGTGTCAAGGATTCAGTATTGGGGTAACTATGTTGAAGTTATTCAGCTAAGTACAAACTCATTGACAGGAATGCTGCCAAATGAAACTACTCAATTTTTAAGGTTAACTGCTCTTAAGGTATCCAATAACTCATTGGAGGGCTTTCTCCCACCAGTCTTGGGAACATATCCAGAACTAAAAGAGATTGATCTTAGCCTCAACCAGCTTTCTGGGTTCCTCCTACCAAGCTTTTTCACCTCAATCAAGTTGACTAATCTTAACCTCTCGAACAATAAGTTTTCCGGACCAATTCCTGTTCAACTTCAACTTCCAAATAATCCATTAGTTTCTTCTGAAAATTTTAGTCTGGTGTTTCTTGATCTTTCAAACAACAACTTAAGTGGGCCTCTTCCTTCAAAAATGTATAAGCTTCACAATTTAGCATATCTCAATCTATGTAACAACAAATTTGAAGGTACTATTCCTGATGATCTTCCAAATGAGTTGAGAGGATTCAATGTGTCCTTCAATAATCTCTCTGGTGTTGTCCCAGACAACTTGATCCAGTTTCCTGAATCAGCATTTCATCCGGGAAATACTATGCTGATATTTCCACATTCACAATTATCACCAAAAGATAATTCCAACCTGGATTTGAGGGAACATGGGTTACACAAAAGATCTGCAACTAGGAGTGTCTTGATTGCATGTCTGGTTACTGGTGCTATTGTGATGGCTATTGTGGGTATAATGACTTATTATAGGGTCCATCAAAAAACAGAAGGGACTTCTAAACAAAATGCACCAAGTGGCATCATCCAAGAGAGTACTTCCACAACAAAGACAGAAGCACCTAGCAGAAATTTGGAGTCATTACCACCTTCTCAAAAGCAGTCAGCTGATGATACCAGAAACATTCATCCAATAGCAAAAAAGCCAAAAGATTTTGATCATCCTGAATTAGTTAAGAATGAGGAAGGAACTTCTTCTCCAATGTCTATTTTGTCAGCTTCAAATCCTTCATCTTCTAAAAGCCATCAGTTTGAGAATCCTGGCAACCTCAAAGTATCATCCCCAGATAAACTGGTTGGGGACTTGCATCTATTTGATGGATCCTTGGTGCTGACTGCAGAAGAACTTTCATGTGCTCCAGCAGAAGTTGTTGGCAGGAGTTGTCATGGAACACTCTACAAAGCCACACTTGATTCTGGTCATACATTGGCTGTCAAATGGTTAAGAGAAGGAATAACTAAAGGTAAAAAGGAGTTGGCAAGGGAAATAAAGAAACTTGCAACTATCAAGCATCCAAGCCTGGTTTCTGTTCAGGGTTACTACCTAGGGCCAAAGGAGCATGAGAGACTGATTATATCAAATTACATGAATGCACAATCTTTGGACATTTATCTCCATGGTAATAATATGGCAGATAAAAGAAATCTCCATCCTTTGTCTCTTGATGAAAGGCTCAGGGTGGCAGTAGAGGTAGCGCGATGTCTGCTTTACCTACACGATGAGAAAGCCATACCTCATGGCAATCTCAAATCCACAAACATTCTACTAGAAACTCCTAACAGAAATGTCCTCATCACTGACTACAGCCTGCACAGAATACTTACTGCTTCTGGTACTGCTGAGCAAGTTCTGAATGCTGGTGCACTTGGTTATCGGCCACCCGAGTTTGCTAGATCAAGCAAACCATGCCCTTCCTTGAAGAGTGATGTCTATGCATTTGGTGTTGTCTTGTTAGAGCTCCTAACAGGAAGAAATTCTGGAGAAATAGTTTGTGGTATTCCAAGGGTGGTTGACCTTACTGACTGGGTGAGGTTCTTAGCTGAACATGATCGTTCTAGCCAGTGCTTTGAGAGGTCCCTTTTGGACAAGCAAAATGGATCAGAAAGATCATCTAGGATTCTTGATGACATGCTAAAAGTGGCTCTTAGATGCATCCTTCCAGCATCTGAGAGGCCTGACATGAAAACAGTCTTTGATGAGCTTTCAACAATAAGGTAG 3024 0.4005 MQAIWLMLFLLVAIVLGNSDIDALLELKKSIQNDPSGLVLNSWDSKSLDSDGCPQNWYGILCTEGSVISITLDNAGLFGEFNFLAISGLTMLRNLSVVNNQFTGSIIHIGPMKSLEFLDLSCNKFNGSLLSNFVELHNLVYLNLSSNEFSGTLSIGFHKLEQLKYLDLHTNNFSGDITHILSQMGSVLHVDLSSNRFSGTLDLGLGDDSFLSSIQYLNVSYNSLIGELFAHDGMPYLDNLEVLDASNNQLVGHIPSFTFVVSLRILRLACNQLTGSLPETLLRESSMMLSELDLSQNQLEGPIGSITSVTLRKLNISSNKLSGPLPLRVGHCAILDLSNNMLSGNVSRIQYWGNYVEVIQLSTNSLTGMLPNETTQFLRLTALKVSNNSLEGFLPPVLGTYPELKEIDLSLNQLSGFLLPSFFTSIKLTNLNLSNNKFSGPIPVQLQLPNNPLVSSENFSLVFLDLSNNNLSGPLPSKMYKLHNLAYLNLCNNKFEGTIPDDLPNELRGFNVSFNNLSGVVPDNLIQFPESAFHPGNTMLIFPHSQLSPKDNSNLDLREHGLHKRSATRSVLIACLVTGAIVMAIVGIMTYYRVHQKTEGTSKQNAPSGIIQESTSTTKTEAPSRNLESLPPSQKQSADDTRNIHPIAKKPKDFDHPELVKNEEGTSSPMSILSASNPSSSKSHQFENPGNLKVSSPDKLVGDLHLFDGSLVLTAEELSCAPAEVVGRSCHGTLYKATLDSGHTLAVKWLREGITKGKKELAREIKKLATIKHPSLVSVQGYYLGPKEHERLIISNYMNAQSLDIYLHGNNMADKRNLHPLSLDERLRVAVEVARCLLYLHDEKAIPHGNLKSTNILLETPNRNVLITDYSLHRILTASGTAEQVLNAGALGYRPPEFARSSKPCPSLKSDVYAFGVVLLELLTGRNSGEIVCGIPRVVDLTDWVRFLAEHDRSSQCFERSLLDKQNGSERSSRILDDMLKVALRCILPASERPDMKTVFDELSTIR. 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00596 1007 Gene3D Ribonuclease Inhibitor 356 457 IPR032675 -
Seca7g00596 1007 Gene3D Ribonuclease Inhibitor 17 181 IPR032675 -
Seca7g00596 1007 MobiDBLite consensus disorder prediction 598 694 - -
Seca7g00596 1007 MobiDBLite consensus disorder prediction 664 692 - -
Seca7g00596 1007 SUPERFAMILY L domain-like 20 302 - -
Seca7g00596 1007 MobiDBLite consensus disorder prediction 642 662 - -
Seca7g00596 1007 MobiDBLite consensus disorder prediction 598 641 - -
Seca7g00596 1007 Pfam Protein tyrosine and serine/threonine kinase 724 948 IPR001245 GO:0004672|GO:0006468
Seca7g00596 1007 Pfam Leucine rich repeat N-terminal domain 18 62 IPR013210 -
Seca7g00596 1007 FunFam Leucine-rich repeat receptor-like protein kinase 705 797 - -
Seca7g00596 1007 SUPERFAMILY L domain-like 446 528 - -
Seca7g00596 1007 SUPERFAMILY Protein kinase-like (PK-like) 724 1003 IPR011009 -
Seca7g00596 1007 Gene3D Ribonuclease Inhibitor 458 546 IPR032675 -
Seca7g00596 1007 SUPERFAMILY L domain-like 235 455 - -
Seca7g00596 1007 Gene3D Phosphorylase Kinase; domain 1 726 798 - -
Seca7g00596 1007 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 17 226 - -
Seca7g00596 1007 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 232 460 - -
Seca7g00596 1007 PANTHER OS07G0626500 PROTEIN 5 98 - -
Seca7g00596 1007 ProSiteProfiles Protein kinase domain profile. 720 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00596 1007 Gene3D Ribonuclease Inhibitor 182 355 IPR032675 -
Seca7g00596 1007 Gene3D Transferase(Phosphotransferase) domain 1 799 1007 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00596 Seca-Chr7 6428356 6433254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00596 250 401 Receptor kinase-like Gene Family AT1G48480 31.210 5.88e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca7g00596 PK_Tyr_Ser-Thr 1.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00596 - - ccaj:109792420 1645.17