Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca7g00582 | ATGGCTGTCGACGAAGACAACGCCCCAACACAGGAAGAAGAACAAGAAGATCAGCCTCAAAACGACGCCGAACAACAAGAACAAGAAGGAGGACAAGAAGAGGAAGAGGAAGAGGAAGAGGAGGAAGAGGAACAACAACAAGAACAAGAAACCCTAGAAGAAGAAGAACACCAACAAGAGCAAGAGCGTGGTGACGCACAAGCTTCAAACCCTGCTGCCACGTCAGAAGCGAATGGCAACAACAATAACGAAGAGGAAGACCTTGATTTGGAGGACGAGCCCGTGGAGAAGCTTCTCGAACCTTTCACGAGGGAGCAGTTACACTCTCTCGTGAAGCAAGCCGTCGAGAAACACCCTGATTTCGTCGAGAACGTTCGCCAGCTGGCTGACGTGGACCCCGCTCACCGGAAAATCTTCGTCCACGGCCTCGGTTGGGACGCCACCGCCGAAACCCTAACCGCCGTGTTCGGGAAGTACGGCGAGATCGAAGACTGCAAGGCCGTCACCGACAAGTTATCAGGGAAATCGAAGGGCTATGCCTTCATCTTGTTCAAGCACAGAGACGGGGCTCGGAAGGCGCTGAAGAATCCACAGAAGAAGATTGGGAACCGAACCACGTCGTGTCAGTTGGCCTCTGCGGGGCCTGTTCCGGCGCCGCCGCCTAATGCCCCTCCAGTTTCTGAGTACACACAGAGGAAGATCTTTGTGAGCAATGTGAATGCAGAGATTGATCCCCAGAAGCTGCTTGAGTTCTTCAAGCAGTTTGGGGAGGTGGAAGATGGTCCTCTTGGGCTTGATAAGCAAACTGGGAAGCCTAAGGGGTTTGCTCTCTTTGTTTACAAGTCAGTGGATAGTGCCAAGAAGGCTTTGGAAGAGCCACACAAAATTTTTGAGGGGCACACTTTGTATTGTCAGAAGGCTGTTGATGGTCCAAAAGGAAGTAAAGGGTATCATCAGCAACATCAACAGCACCAACACCATTCTCACCATCATCATCAGCATCAGCCCCATTACCATTCAAGGAAGGAGAAGAACAAGTATGGTGGTGGTGGTGGTGGGCCATCACATGGTGGTGGTGGTGGTCACCTGATGGCGCCCTCAGGCCCTGCTGTGGGGGGTTTCAATCCAGGAGTACAGGCTCAGGGGTTGAATCCTGCACTTGGACAGGCTTTAACTGCTTTGCTTGCAAATCAAGGAGCTGCTGGATTAGGGCTTGGGAATCTGCTTGGAGGTCTTGGCGGTGCACCGGTGAACCAGGCTGGGCCACCTGCTGCGTATGGTAATCAAGCTGCTATGAGCTATGGGAACCAACCAGGGATGCAACCGGGATACCAGAATCCTCAAATGGGGCAGAGCAGTGGTGTTAGGCCTCACCCTGGTGCTGGTGCTCCTTACATGGGTCATTAG | 1407 | 0.5281 | MAVDEDNAPTQEEEQEDQPQNDAEQQEQEGGQEEEEEEEEEEEEQQQEQETLEEEEHQQEQERGDAQASNPAATSEANGNNNNEEEDLDLEDEPVEKLLEPFTREQLHSLVKQAVEKHPDFVENVRQLADVDPAHRKIFVHGLGWDATAETLTAVFGKYGEIEDCKAVTDKLSGKSKGYAFILFKHRDGARKALKNPQKKIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVNAEIDPQKLLEFFKQFGEVEDGPLGLDKQTGKPKGFALFVYKSVDSAKKALEEPHKIFEGHTLYCQKAVDGPKGSKGYHQQHQQHQHHSHHHHQHQPHYHSRKEKNKYGGGGGGPSHGGGGGHLMAPSGPAVGGFNPGVQAQGLNPALGQALTALLANQGAAGLGLGNLLGGLGGAPVNQAGPPAAYGNQAAMSYGNQPGMQPGYQNPQMGQSSGVRPHPGAGAPYMGH. | 469 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca7g00582 | 468 | Gene3D | - | 227 | 338 | IPR012677 | - | |
| Seca7g00582 | 468 | SUPERFAMILY | RNA-binding domain, RBD | 124 | 215 | IPR035979 | GO:0003676 | |
| Seca7g00582 | 468 | Gene3D | - | 108 | 225 | IPR012677 | - | |
| Seca7g00582 | 468 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 136 | 213 | IPR000504 | GO:0003723 | |
| Seca7g00582 | 468 | SMART | rrm1_1 | 137 | 209 | IPR000504 | GO:0003723 | |
| Seca7g00582 | 468 | SMART | rrm1_1 | 233 | 305 | IPR000504 | GO:0003723 | |
| Seca7g00582 | 468 | SUPERFAMILY | RNA-binding domain, RBD | 216 | 326 | IPR035979 | GO:0003676 | |
| Seca7g00582 | 468 | Coils | Coil | 21 | 62 | - | - | |
| Seca7g00582 | 468 | MobiDBLite | consensus disorder prediction | 437 | 453 | - | - | |
| Seca7g00582 | 468 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - | |
| Seca7g00582 | 468 | MobiDBLite | consensus disorder prediction | 437 | 468 | - | - | |
| Seca7g00582 | 468 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 232 | 309 | IPR000504 | GO:0003723 | |
| Seca7g00582 | 468 | MobiDBLite | consensus disorder prediction | 64 | 81 | - | - | |
| Seca7g00582 | 468 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 9 | 312 | - | - | |
| Seca7g00582 | 468 | MobiDBLite | consensus disorder prediction | 319 | 341 | - | - | |
| Seca7g00582 | 468 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
| Seca7g00582 | 468 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 234 | 302 | IPR000504 | GO:0003723 | |
| Seca7g00582 | 468 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 138 | 205 | IPR000504 | GO:0003723 | |
| Seca7g00582 | 468 | MobiDBLite | consensus disorder prediction | 308 | 372 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca7g00582 | Seca-Chr7 | 6275170 | 6279617 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca7g00582 | 228 | 311 | C2H2 Transcription Factor Family | AT2G19380 | 29.762 | 1.96e-08 | 54.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca7g00582 | K12741 | - | gmx:100783742 | 582.793 |