Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00571 ATGGGAAACTCATGCACAAAACCAGTTGCTCATATGTCTTCCACAAGTTTTTTTGGAAGTACAAAATCTCAAAGTAAGACAAAGCAGAATTCAAATTCTCCTGAAGGAAAAGATTCAGCAACAAATGTTGACATATCCATCTCCAGTAATGTTAAGTCTTTCACCTTCAATGATCTAAAGGAGGCCACCAAGAACTTCCGGCAAGAAAATTTAATTGGGGAGGGAGGTTTTGGGTTTGTCTTCAAGGGATGGATAGATGAGAACACTGGTGCTCCCACAAAACCAGGAACTGGGATTGTAGTGGCCATTAAGAAGCTTAAGCCAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTAGGCCAACATCACCATGAAAATTTGGTGAAACTTATTGGTTACTGCTTAGAAGGTAACAACAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAATCATTTATTCAGAAAAGGTGTTGAACCAATTTCATGGATTACGCGGATCAATATTGCAATTGCAGTTGCCAAAGGATTAGCATTCTTACATTCCCTTGATCAAAATGTTATCTATCGCGATTTAAAGGCTTCCAACATCCTACTTGATTCGGATTTCAATGCAAAGCTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACAGGAGATAATACTCATGTTTCAACCAGAGTCATTGGAACTCATGGTTATGCTGCACCAGAGTATGTTGCTACAGGACATTTGACCTCAAGGAGTGATGTATACAGCTTTGGTGTTGTCTTGTTAGAGTTACTAACAGGAAGGCGTGTAGTTGAAGATGACAGACCTGGATTTTCAGATGAAACATTGGTAGATTGGGCAAGACCCTTCCTGAATGACAGTAGAAGAATTTTGAGAATCATGGATACCAGGTTGGGTGGACAATACTCCAAGAGAGGAGCCCAAGCTGCAGCTGCACTTGTACTGCAATGTCTAAATAGTGACCCCAAATATAGACCACCCATGGTGAATGTTCTAGCTGCATTGGAAGCACTACATTCCTCAAATTCAATCCCAAGGACCCCAAAATCTGGTACTCATGAGAATCATGCTACCAAGCATTCTAGTCATTCCCATAAGTCAGTTGGCAATACTAACAAACTATGA 1161 0.4065 MGNSCTKPVAHMSSTSFFGSTKSQSKTKQNSNSPEGKDSATNVDISISSNVKSFTFNDLKEATKNFRQENLIGEGGFGFVFKGWIDENTGAPTKPGTGIVVAIKKLKPESFQGHKEWLAEVNYLGQHHHENLVKLIGYCLEGNNRLLVYEFMQKGSLENHLFRKGVEPISWITRINIAIAVAKGLAFLHSLDQNVIYRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATGHLTSRSDVYSFGVVLLELLTGRRVVEDDRPGFSDETLVDWARPFLNDSRRILRIMDTRLGGQYSKRGAQAAAALVLQCLNSDPKYRPPMVNVLAALEALHSSNSIPRTPKSGTHENHATKHSSHSHKSVGNTNKL. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00571 386 Gene3D Transferase(Phosphotransferase) domain 1 152 374 - -
Seca7g00571 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Seca7g00571 386 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 152 361 - -
Seca7g00571 386 FunFam Serine/threonine-protein kinase BIK1 32 151 - -
Seca7g00571 386 CDD STKc_IRAK 72 350 - -
Seca7g00571 386 SMART serkin_6 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00571 386 MobiDBLite consensus disorder prediction 354 386 - -
Seca7g00571 386 SUPERFAMILY Protein kinase-like (PK-like) 41 353 IPR011009 -
Seca7g00571 386 MobiDBLite consensus disorder prediction 15 42 - -
Seca7g00571 386 ProSiteProfiles Protein kinase domain profile. 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00571 386 PANTHER OS01G0588500 PROTEIN-RELATED 26 351 - -
Seca7g00571 386 ProSitePatterns Protein kinases ATP-binding region signature. 72 105 IPR017441 GO:0005524
Seca7g00571 386 Gene3D Phosphorylase Kinase; domain 1 40 151 - -
Seca7g00571 386 Pfam Protein tyrosine and serine/threonine kinase 69 345 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00571 Seca-Chr7 6071199 6075402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00571 28 347 Glycoside Hydrolase AT3G07070 49.536 2.89e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca7g00571 PK_Tyr_Ser-Thr 7.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00571 - - gmx:102664409 641.728