Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00570 ATGGCAATTGCAGCCCCAGGGCAACTCAACGTGAGTGAATCTCCCACTTGGGGATCCAGAAGTGTCGATTGCTTCGAGAAATTGGAGCAAATTGGAGAGGGCACATATGGTCAGGTTTATATGGCTAAAGAAATAAAAACTGGTGAAATTGTCGCTCTGAAGAAAATACGAATGGACAACGAGAGAGAGGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTAAAGAAACTACACCATGAGAATGTGATCAAGCTGAAAGAAATTGTGACTTCTCCAGGTACTGCCCTGAGAAAGATGAACAAGGGAAGCCAGGCAAATGGTAATAAATACAAAGGTGGAATCTATATGGTCTTCGAATATATGGACCACGATTTAACAGGTCTTGCTGACCGGCCTGGCATGAGGTTTACAGTTCCCCAAATTAAGTGTTACATGAGACAACTTTTGACGGGACTTCACTATTGTCATGTAAATCAAGTGCTTCATCGTGATATCAAAGGCTCAAATCTGCTTATAGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAACGACCAAAATGCAAATCTTACAAATCGTGTCATTACATTATGGTACAGACCACCTGAGTTGCTGCTAGGGACAACAAAGTACGGTCCAGCTGTAGATATGTGGTCTGTTGGTTGCATTTTTGCTGAACTTCTTCATGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCAGAACAACTAAATAAAATATTTGAGCTGTGTGGAGCACCGGATGAGGTCAATTGGCCTGGGGTTTCTAAGACGCCTTGGTATAATCAATTTAAGCCATCAAGGCCAATGAAAAGACGTTTGAGGGAAGTTTTCAGGCACTTTGATCGTCATGCTCTGGAATTGTTGGAGAGGATGTTGATGCTTGATCCGGCTCAGAGAATTACTGCGAAGGATGCACTGGATGCTGAGTATTTCTGGACAGATCCATTACCATGTGATCCCAAGAGTTTACCCAAGTATGAGTCATCACATGAGTTTCAGACAAAGAAAAAGCGCCAGCAACAACGGCAAAATGAAGAACTGGCTAAGCGTCAGAAAGTGCAACACCCACAGCAGCACACCCGTCTTCCCCCCATTCAGCAGCCTGGCCAACATGCCCAAATGCGGTCAGGACCTAACCAACCACCAATGCATGGCTCTCAACCTCAGGTTGGTGCAGGAGCCACTCATCATTATGGGAAGGCTCGAGGTCCATCTGGTGGGCCAGGAAGATATCCCCCCGGCGGGAACCCTAGCGGAGGATATAATCACCCAAATCGTGGAGGTCAAGGAGGAGGAGGAGGAGGAGCTGGTTATGGCAGTGGGCCTTATCCTCCTCAAGGACGCGGGGCACCTTATGGGTCCAGTAATATGCCTGGCGGTGGTCCTCGTGGTGGAGGTGGTGGCGGCTATGGAGTTGGCGCTCCAAATTATCCCCAACAAGGTGGTCCATATGGGGGTTCAGCAGCTGGTCGTGGCGGCTCCAACATGATGGGTGGAAACCGCAATCAACAATATGGTTGGCAGCAGTAA 1578 0.4696 MAIAAPGQLNVSESPTWGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGTALRKMNKGSQANGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDQNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPSRPMKRRLREVFRHFDRHALELLERMLMLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEELAKRQKVQHPQQHTRLPPIQQPGQHAQMRSGPNQPPMHGSQPQVGAGATHHYGKARGPSGGPGRYPPGGNPSGGYNHPNRGGQGGGGGGAGYGSGPYPPQGRGAPYGSSNMPGGGPRGGGGGGYGVGAPNYPQQGGPYGGSAAGRGGSNMMGGNRNQQYGWQQ. 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00570 525 CDD STKc_CDK9_like 25 327 - -
Seca7g00570 525 FunFam Cyclin-dependent kinase C-2 12 124 - -
Seca7g00570 525 SUPERFAMILY Protein kinase-like (PK-like) 18 335 IPR011009 -
Seca7g00570 525 Coils Coil 346 366 - -
Seca7g00570 525 SMART serkin_6 25 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00570 525 PANTHER CELL DIVISION PROTEIN KINASE 23 333 - -
Seca7g00570 525 MobiDBLite consensus disorder prediction 373 402 - -
Seca7g00570 525 Gene3D Phosphorylase Kinase; domain 1 12 124 - -
Seca7g00570 525 Gene3D Transferase(Phosphotransferase) domain 1 125 367 - -
Seca7g00570 525 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Seca7g00570 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Seca7g00570 525 MobiDBLite consensus disorder prediction 338 525 - -
Seca7g00570 525 FunFam Cyclin-dependent kinase C-2 125 367 - -
Seca7g00570 525 ProSiteProfiles Protein kinase domain profile. 25 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00570 525 MobiDBLite consensus disorder prediction 340 369 - -
Seca7g00570 525 Pfam Protein kinase domain 25 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00570 Seca-Chr7 6064580 6069583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00570 1 525 Core Cell Cycle Gene Families AT5G10270 76.271 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca7g00570 Pkinase 9.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00570 K08819 - mnt:21403150 857.44