Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca7g00562 | ATGGCTGTTACCTTTTCAGATCTACACACCGAGAGTGGCCTCAAATCCCTCGATGAATTCCTCTCTGGGAAGACCTATATTTCTGGGGATCAATTGACAAAGGATGATATCAAAGTGTTTGCAGCTGTTCTGGAAAAGCCAGGAGCCTCTTTGCCCAATGCTGCAAAGTGGTACGATGTTGTCTCTTCACATCTTGCTGCAAGGTATGTTCTGTTCCTTCTCTTTTATATGAGTAGCTTCCCAGGGAATGCTCAAGGGGTAAAATTTGCCGGTGGCAATGCTGCTCCATCTGCACCTGCCAAAGTGGATGCTCCTGCAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAAACAGAGGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCCGCAAAGAAGAAAGAAAGTGGTAAGTCTTCCGTTCTGCTTGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGCATTGAGATGCCTGGTTTATTGTGGGGAGCATCTAAACTGGTTCCAGTGGGATATGGGATTAAGAAGCTGCAGATCATGATGACCATTGTTGATGATCTTGTATCTGTGGACTCCCTCATTGAGGAATATCTGACAGTTGAACCATGCAATGAGTATGTCCAAAGCTGTGACATTGTTGCATTCAACAAAATTTAA | 699 | 0.4492 | MAVTFSDLHTESGLKSLDEFLSGKTYISGDQLTKDDIKVFAAVLEKPGASLPNAAKWYDVVSSHLAARYVLFLLFYMSSFPGNAQGVKFAGGNAAPSAPAKVDAPAEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEEYLTVEPCNEYVQSCDIVAFNKI. | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca7g00562 | 232 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 221 | 232 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
| Seca7g00562 | 232 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 108 | 116 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
| Seca7g00562 | 232 | SMART | EF1_GNE_2 | 143 | 232 | IPR014038 | GO:0003746|GO:0006414 | |
| Seca7g00562 | 232 | MobiDBLite | consensus disorder prediction | 120 | 140 | - | - | |
| Seca7g00562 | 232 | Pfam | EF-1 guanine nucleotide exchange domain | 145 | 232 | IPR014038 | GO:0003746|GO:0006414 | |
| Seca7g00562 | 232 | FunFam | Elongation factor 1-beta 1 like | 137 | 232 | - | - | |
| Seca7g00562 | 232 | SUPERFAMILY | GST C-terminal domain-like | 10 | 68 | IPR036282 | - | |
| Seca7g00562 | 232 | SUPERFAMILY | eEF-1beta-like | 140 | 232 | IPR036219 | - | |
| Seca7g00562 | 232 | Gene3D | - | 136 | 232 | IPR014717 | - | |
| Seca7g00562 | 232 | CDD | EF1B | 141 | 232 | IPR014038 | GO:0003746|GO:0006414 | |
| Seca7g00562 | 232 | Gene3D | - | 3 | 71 | - | - | |
| Seca7g00562 | 232 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 8 | 232 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca7g00562 | Seca-Chr7 | 5990178 | 5993467 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca7g00562 | 1 | 232 | Eukaryotic Initiation Factors Gene Family | AT5G12110 | 71.548 | 8.18e-105 | 300 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca7g00562 | K03232 | - | gmx:100816855 | 318.931 |