Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00561 ATGTCAAGTGAAGCAACACATTGGTGTTATGCTTGTAGTCAGCCAATTGTGCTTGATGGGGGAGATGTTGCTTGCCCTTACTGTGATGGAGGATTTGTACAAGAACTTAATGAGTTGCGAGGTGTTGCTGCACCCCAACATAACTTTTCTTCGCAGTCAGGAGAGTTTCACCAAATGCCTGACATTTTCGATGCTATACATGCTTTTATGGGGCAGAGAGGTTCTGACCAAAGATTTGGGCTTATAGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGACACTCAAACTTTGATGTTAGAGGGAGGTCTGGTTCTGTCCCAGTCCCTGAACAGAGTTGGGGTGTTTATAGTTCTGGTCCTTATTTAATATTTCATGGCCAAGTTCCTGGATTCACCTTGTCTAATGGCAGCCCAAGAGGTGGTCCCAGGCGTGTTGATTTTGGTGACTATTTTATGGGTCCTGGACTGGAAGAACTCATTGAACAACTCACCATGAATGATCGGCGTGGTCCACCCCCAGCTGCGCGATCTTCAATTGATGCAATGCCTACTGTTAGGATCACACAGGCGCATCTTCGCTCAGATTCACACTGTCCAGTTTGTAAAGAACAATTTGAACTAGGCTCTGAAGCCAGAGCAATGCCATGCAACCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTCAACATAACTCATGTCCTGTTTGCCGAGTTGAGCTGCCACCTCAAGGACAGGGACATGTTAGCTCTCGTGGCAATCGAAGTTGGGGAGGAAGGAATGCCAACAACAGCAGTGACAATGATGGCTCCAGGGTCTGGGATATCCATCAGAACCATTGGGGAGGAAGGAATGCCAACAACAGCAGTGACAATGATGGCTCCAGGGTCTGGGATATCCATCAGAACCATAGGAGGAGAAATCCACTATCATTTTTGTGGCCATTCCGTTCTTCTAGTTCAAACAATAATCATTATTCTGAGACTGGGGGAAGTAGCTCTTCAGCCCCTCCTGACCAGAATAATGGAAGAAGTTATAGTGGATGGCCCTTTGATCACTAA 1074 0.459 MSSEATHWCYACSQPIVLDGGDVACPYCDGGFVQELNELRGVAAPQHNFSSQSGEFHQMPDIFDAIHAFMGQRGSDQRFGLIDAVDNFMRHRMAGRHSNFDVRGRSGSVPVPEQSWGVYSSGPYLIFHGQVPGFTLSNGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDRRGPPPAARSSIDAMPTVRITQAHLRSDSHCPVCKEQFELGSEARAMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQGHVSSRGNRSWGGRNANNSSDNDGSRVWDIHQNHWGGRNANNSSDNDGSRVWDIHQNHRRRNPLSFLWPFRSSSSNNNHYSETGGSSSSAPPDQNNGRSYSGWPFDH. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00561 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 99 246 - -
Seca7g00561 357 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Seca7g00561 357 MobiDBLite consensus disorder prediction 244 301 - -
Seca7g00561 357 MobiDBLite consensus disorder prediction 251 276 - -
Seca7g00561 357 MobiDBLite consensus disorder prediction 327 357 - -
Seca7g00561 357 FunFam E3 ubiquitin-protein ligase RING1-like 165 248 - -
Seca7g00561 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 248 IPR013083 -
Seca7g00561 357 CDD RING-H2_RNF126-like 201 242 - -
Seca7g00561 357 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Seca7g00561 357 SUPERFAMILY RING/U-box 181 248 - -
Seca7g00561 357 MobiDBLite consensus disorder prediction 285 300 - -
Seca7g00561 357 SMART ring_2 201 241 IPR001841 -
Seca7g00561 357 MobiDBLite consensus disorder prediction 327 351 - -
Seca7g00561 357 Pfam Ring finger domain 200 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00561 Seca-Chr7 5984236 5985309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00561 145 258 C3H Transcription Factor Family AT5G01980 43.103 9.84e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00561 K11982 - gmx:100813674 608.601