Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00520 ATGGCGACTATCAGCCTCCGGAAGGGGAACACGCGGCTGCCGCCGGAGGTGAACCGCGTGCTCTACGTGAGGAACCTTCCGTTCAACATAACGAGTGAGGAGATGTACGACATATTCGGCAAGTACGGTGCAATCCGGCAGATCCGAATCGGCACGAACAAGGACACGCGCGGCACCGCCTTCGTCGTGTACGAGGACATCTACGACGCTAAAACCGCCGTCGACCACCTCTCTGGCTTCAACGTCGCCAACCGTTACCTCATCGTGCTGTATTACCAGCAGGCCAAGATGAGCAAGAAGTTCGACCAGAAGAAGAAGGAGGACGAAATCGCTCGCATGCAGGAGAAGTACGGCGTCTCTACCAAAGACAAGTAG 375 0.5627 MATISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKDK. 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00520 124 FunFam splicing factor 3B subunit 6-like protein 15 118 - -
Seca7g00520 124 SMART rrm1_1 20 90 IPR000504 GO:0003723
Seca7g00520 124 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 21 109 - -
Seca7g00520 124 CDD RRM_SF3B14 17 93 IPR034150 -
Seca7g00520 124 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Seca7g00520 124 SUPERFAMILY RNA-binding domain, RBD 7 102 IPR035979 GO:0003676
Seca7g00520 124 Gene3D - 15 120 IPR012677 -
Seca7g00520 124 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00520 Seca-Chr7 5576495 5579298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00520 21 109 Eukaryotic Initiation Factors Gene Family AT2G36660 31.868 5.82e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00520 K12833 - gmx:100802877 247.669