Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00519 ATGGGCAATTGTTGCTCAGGTGGCACTGATGACCCTGAGAACAAGGGAGAAACCAACCAACAACAGCATCAAGGCAGCAATGCAGGTGCAGACTCTGCCACCACCCCACCACCATCATCATCAGCCAAGGCATCCCATCCTCCTTCTAATAATAAGCATTCAAAACCAGCCCCTGTTGGTCCTGTTCTTGGCAGGCCAATGGAGGATGTCAAAGCCACTTACACAATAGGGAAGGAGCTTGGGAGAGGACAATTTGGTGTGACACATTTGTGCACACAAAAGACCACAGGGAAGCAATATGCATGCAAAACAATAGCCAAGAGAAAGCTTGTGAATAAGGAGGACATAGAGGATGTAAGGAGGGAGGTTCAAATCATGCATCATCTCTCAGGGCAGGCTAATATTGTGGAACTTGTTGGTGCCTTTGAGGATAAGCAATCTGTTCATTTGGTGATGGAGTTGTGTGCAGGGGGTGAGCTCTTTGATCGGATCATTGCCAAGGGACATTACACTGAACGTGCTGCTGCTTCTTTGATGAGAACCATAGTTCAGATTGTCCACACTTGTCATTCCATGGGTGTCATTCACAGAGATCTTAAGCCTGAGAATTTCCTTTTGTTGAACAAGGATGAGAATGCACCTCTTAAGGCCACAGATTTTGGTCTATCAGTTTTTTACAAGCAAGGAGAGGTGTTTAAAGATATTGTCGGTAGTGCATATTACATTGCACCTGAGGTCTTGAAGAGGAAATATGGACCAGAAGTAGACATTTGGAGTATTGGAGTTATGTTATATATTCTCCTATGCGGTGTTCCACCATTTTGGGCAGAATCCGAAAATGGGATATTCAATGCTATCCTACGAGGCCATATTGACTTTACTAGCGATCCATGGCCCTCCATTTCACCTGCAGCAAAAGATCTTGTAAGGAGAATGTTGAATTCAGATCCAAAGCAGAGGCTAACAGCATACGAAGTTCTGAGTAAGTATATTCATTGGCTTCCTTTCTATGAACTGCTTGAATTCAATTGCGATTGCATGGTTACAAATCCATTTTACTTTAGTCCCCTCAGATTGGTTCAATGCAATTCTAACAGAGCAATTCTTATGCCAAAAACAGATCATCCATGGATCAAGGAGGATGGAGAAGCGCCAGATAAACCTCTTGACAATGCAGTGCTGAATAGGCTCAAACAATTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTAGCTGCCTATCCGAGGAAGAAATCATGGGATTGAAGCAAATGTTCAAGGCGATGGACACTGACAACAGCGGAACCATTACAATTGAAGAGCTCAAGCAAGGGCTTGCAAAACAAGGAACTAAGTTGACAGAACAAGAAGTTAAGCAATTATTGGAAGCTGCGGATGCTGATGGTAATGGAACCATAGATTACGACGAGTTTATCACAGCAACAATGCACATGAACCGAATGAACAGAGAAGAACATCTTTATACTGCCTTCCAATACTTTGATAAAGATAATAGCGGGTACATTACCATTGAAGAACTAGAGCAAGCACTCCATGAGTTTAACATGCATGACGGCAGGGACATGAAGGAAATCATTTCAGAAGTCGATGCAGATAATGATGGCCGAATCAACTATGATGAGTTTGTTGCAATGATGAGCAAAGGAAACCCTGAAGCTCATACCAAGAAAAGGCGTGATTCAACCTTGTATTAG 1728 0.4294 MGNCCSGGTDDPENKGETNQQQHQGSNAGADSATTPPPSSSAKASHPPSNNKHSKPAPVGPVLGRPMEDVKATYTIGKELGRGQFGVTHLCTQKTTGKQYACKTIAKRKLVNKEDIEDVRREVQIMHHLSGQANIVELVGAFEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLMRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFYKQGEVFKDIVGSAYYIAPEVLKRKYGPEVDIWSIGVMLYILLCGVPPFWAESENGIFNAILRGHIDFTSDPWPSISPAAKDLVRRMLNSDPKQRLTAYEVLSKYIHWLPFYELLEFNCDCMVTNPFYFSPLRLVQCNSNRAILMPKTDHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIASCLSEEEIMGLKQMFKAMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLLEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGYITIEELEQALHEFNMHDGRDMKEIISEVDADNDGRINYDEFVAMMSKGNPEAHTKKRRDSTLY. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00519 575 ProSitePatterns EF-hand calcium-binding domain. 541 553 IPR018247 -
Seca7g00519 575 ProSiteProfiles EF-hand calcium-binding domain profile. 532 563 IPR002048 GO:0005509
Seca7g00519 575 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Seca7g00519 575 FunFam Calcium-dependent protein kinase 1 76 159 - -
Seca7g00519 575 Pfam Protein kinase domain 74 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00519 575 PANTHER SERINE/THREONINE-PROTEIN KINASE 69 553 - -
Seca7g00519 575 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Seca7g00519 575 SUPERFAMILY Protein kinase-like (PK-like) 73 341 IPR011009 -
Seca7g00519 575 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Seca7g00519 575 CDD STKc_CAMK 74 328 - -
Seca7g00519 575 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Seca7g00519 575 ProSiteProfiles Protein kinase domain profile. 74 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00519 575 ProSitePatterns Protein kinases ATP-binding region signature. 80 107 IPR017441 GO:0005524
Seca7g00519 575 SMART serkin_6 74 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00519 575 Gene3D Transferase(Phosphotransferase) domain 1 161 335 - -
Seca7g00519 575 Pfam EF-hand domain pair 426 486 IPR002048 GO:0005509
Seca7g00519 575 Pfam EF-hand domain pair 495 558 IPR002048 GO:0005509
Seca7g00519 575 Gene3D - 368 559 - -
Seca7g00519 575 FunFam Calcium-dependent protein kinase 1 386 561 - -
Seca7g00519 575 SUPERFAMILY EF-hand 418 558 IPR011992 -
Seca7g00519 575 Gene3D Phosphorylase Kinase; domain 1 75 160 - -
Seca7g00519 575 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Seca7g00519 575 SMART efh_1 461 489 IPR002048 GO:0005509
Seca7g00519 575 SMART efh_1 425 453 IPR002048 GO:0005509
Seca7g00519 575 SMART efh_1 497 525 IPR002048 GO:0005509
Seca7g00519 575 SMART efh_1 532 560 IPR002048 GO:0005509
Seca7g00519 575 MobiDBLite consensus disorder prediction 12 52 - -
Seca7g00519 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Seca7g00519 575 ProSiteProfiles EF-hand calcium-binding domain profile. 493 528 IPR002048 GO:0005509
Seca7g00519 575 FunFam calcium-dependent protein kinase 1 160 335 - -
Seca7g00519 575 MobiDBLite consensus disorder prediction 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00519 Seca-Chr7 5574250 5577454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00519 1 571 EF-hand Containing Proteins AT5G12180 74.781 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca7g00519 Pkinase 1.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00519 K13412 - gmx:100820422 915.605