Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00499 ATGGCTGAAAATGGGTATGCTCTCGCTCTCTCCCCTGCCTCAGACGATGACTCCTCTCAACACAACCCAGGGAGCTTCGCCACTCTATCTGATGGCTCCTCCATCTTCAGTAGAGGGTACATGATCTCCCTTTCCAATAACAACAATGACAACCTTCTGCCAAACCAACCACCACCACCATCACCCTCCTCTGTCAGAGTCCTCCCAAAGGATGAGGATATGAACACACCCCCCAACTCCAAGAGGCCAAGGGGAAGGCCACCTGGTTCCAAGAACAAGCCCAAGCCACCCCTCATCGTCAAGCAAGACACTGATGAGTTCCTTAAACCAGTTCTCATCGAAATTCCTGCTGGACAAGATGTTGTGGAAGCTATCATCGCATTTGCTAACCGGCGTCGTGTCAACATCTCAGTGTTGAGTGGTTCGGGTTCTCTCTCTGAGGTTACAATTTGCCCAAATCAGTCCCGTTCTCCTTCTTTCCCTCTCAAGGGAGACTTTAACATGATTTCTCTTACAGGCACTTACATGAGTGGTAGTTTCCCTCCACTCTCCATTCCCAACCCTATTTGTTCCTCCTTCATGATTTACGTATCCGGGAACCAGAACCAGATGTTGGGTGGGGTTGTTGCAGGGAAGGTTGTGGCTTCAGGTCTTGTGGTTGTTATGGCCGCAGTTTTCAAGAAATCTGAGTACCACAAGGTGCCTTTTATCAATGGAACTGTTGAGGAAGCCAATGAAGATGATGGTGATGCCATATATGCGACTATGATCAATGCTGATGTGGGTGAACCTAGTGGCATTACCAACAACATCAACAACAACAATGGCATGGCAATGCCTAATATGTCTGCTTTTAATGTTGCTGCTGCTAATTCAACTCCTTTGCTGACTCATCCTATTCCTTCTGATATGAATGTCATGCAGTGGAACCGCTATGATAATCATTAG 948 0.4736 MAENGYALALSPASDDDSSQHNPGSFATLSDGSSIFSRGYMISLSNNNNDNLLPNQPPPPSPSSVRVLPKDEDMNTPPNSKRPRGRPPGSKNKPKPPLIVKQDTDEFLKPVLIEIPAGQDVVEAIIAFANRRRVNISVLSGSGSLSEVTICPNQSRSPSFPLKGDFNMISLTGTYMSGSFPPLSIPNPICSSFMIYVSGNQNQMLGGVVAGKVVASGLVVVMAAVFKKSEYHKVPFINGTVEEANEDDGDAIYATMINADVGEPSGITNNINNNNGMAMPNMSAFNVAAANSTPLLTHPIPSDMNVMQWNRYDNH. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00499 315 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 227 IPR005175 -
Seca7g00499 315 MobiDBLite consensus disorder prediction 46 100 - -
Seca7g00499 315 Gene3D - 108 243 - -
Seca7g00499 315 SUPERFAMILY AF0104/ALDC/Ptd012-like 108 235 - -
Seca7g00499 315 MobiDBLite consensus disorder prediction 13 30 - -
Seca7g00499 315 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 67 264 IPR014476 GO:0003680
Seca7g00499 315 ProSiteProfiles PPC domain profile profile. 105 247 IPR005175 -
Seca7g00499 315 MobiDBLite consensus disorder prediction 1 30 - -
Seca7g00499 315 CDD DUF296 109 226 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00499 Seca-Chr7 5316786 5317733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00499 81 235 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 42.593 5.43e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00499 - - lang:109328424 203.371