Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00496 ATGGGTATGTTTGTTATGGCACCACCTTCTTCTTTCAACAACAACAACAACCCTCTCCTCTCCGATCCTCATTCCCTCAACCCCGCCACCGCTCTCGGCGTCGGTGTCATCCCTCTCCTCACCGCTTCCCCTTGCATAGAAACCACAACCACCAACATGCTTAGTAATAACAGAAGACAACAACAACAACAAGGGATAATTCATCAGTTTTGGCAGGAACAACAACAAGGGGATTTAAATTTACTTCATGCTGGTTCTGGTTCTGTTGCAACGAACAGTAATAGTGGTGGTGGAGGAGGAACTACGTGCCAAGACTGTGGAAACCAAGCAAAGAAAGATTGTACTAATAGAAGGTGTAGGACTTGTTGTAAAAGTAGAGGTTTTGATTGCCCTACTCATGTTAAAAGCACTTGGGTTCCTGCTTCTAGGAGAAGAGAACGACAACTTATGGCGGCGGCTGCGGCGGCGGTTGCTGGCTCCACCGGGTCTAGCTCTGGTTCCAAGAAACCTAGACTTATTACTTCACAAACTACCACTACTTCTCATACTTCAACTTCTAACACAACCCCTCCTAGAAGCTTTGACACTGGCTCTAGCCATCAAGATGCGAGTTTTAAAGAGTCAATGCCTGGTCAAGTACGTGCACCAGCGGTATTCAAGTGTGTGAGAGTGACGGCGGAGGAAGATGGGAAGGATGAGTATGCATATCAAGCTGTGGTGAAGATTAATGGTCATGTGTTTAAAGGGTTTCTCTATGATCAAGGGGTTGAGAGTAGAGATCATGTGTATCCTAATTTATCTGAGTTGCATTTAGGTGGAAGTGGAAGTGGAAGTGTTGGGAGAAATAATGGGGTTTCATCTTCATCACCAGTGATGGATCCTTCTGATGTTTATGCAGGTGGAGGAGGAGGGTTACTTGGAGGAGGAGGAGGAGGTTCAACCTATGGTGGTAATATCCAATAA 963 0.4579 MGMFVMAPPSSFNNNNNPLLSDPHSLNPATALGVGVIPLLTASPCIETTTTNMLSNNRRQQQQQGIIHQFWQEQQQGDLNLLHAGSGSVATNSNSGGGGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPASRRRERQLMAAAAAAVAGSTGSSSGSKKPRLITSQTTTTSHTSTSNTTPPRSFDTGSSHQDASFKESMPGQVRAPAVFKCVRVTAEEDGKDEYAYQAVVKINGHVFKGFLYDQGVESRDHVYPNLSELHLGGSGSGSVGRNNGVSSSSPVMDPSDVYAGGGGGLLGGGGGGSTYGGNIQ. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00496 320 MobiDBLite consensus disorder prediction 150 209 - -
Seca7g00496 320 NCBIfam LRP1 C-terminal domain 209 256 IPR006511 -
Seca7g00496 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 53 299 IPR007818 GO:0003700|GO:0006355
Seca7g00496 320 Pfam Domain of unknown function (DUF702) 100 257 - -
Seca7g00496 320 MobiDBLite consensus disorder prediction 158 206 - -
Seca7g00496 320 NCBIfam putative zinc finger domain, LRP1 type 102 144 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00496 Seca-Chr7 5257428 5259323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00496 3 297 C2H2 Transcription Factor Family AT5G12330 54.870 3.07e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca7g00496 DUF702 7.3e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00496 - - vun:114194574 364.385