Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00482 ATGGAAGAATCAGGTGAATTGCAATCAGAAGAAAATAAGGTCTCTGCAGAGAAAAATAAAAAAAGAAAGCTCAAAACACCTGCCCAGGTTATGGCCTTGGAGAAATTTTATGATGAGCACAAATATCCGACAGAGGAAATGAAATCAGAACTTTCTGCGGAGTTAGGGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAATCAGCTGCTAATGGACGACAAGATCGATCGAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGACAAGATTCATGTGGAAGCAGTAAATATGGTGATCATAAGTATCTGGATCCTAAAGAGGTTGAGAGCCATGGCCTCCACAATCATGATTTTCCAACTGCAGATATGACCTACGGACGTATGAATCATTATCCAGAAAATGTTAGCGAAATGGATGACACATCATCTGAGAGCTCATTTCTGCAAGAACGGTTTTCTCAAGGCCAGGAGCCCTACGATACGGAGCCTTCTAGATATCTAACACCTAGCAGAACTCTTCCACCCCTAAATCCCAAGGGTGCAATTAACATGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGCGAGATAGAAAATGCTGCTATCACTGCCGTTAAGAAGCAATTAGGAAGGCATTATCGGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCACTTCCTCCAGGGGCATTTGAAGGCCAAATTGAAGATCAAGTTCATGAACCATACTGTGTTGCGAATCCTGCTCTTCCAAATTCTCCAGAAATTTCTGCTGTGAAAAGGCGACCCAGTGTTAGCTCTAGATATGATTCGTATTATACTAAATTTAGTTGCCAAGATTCACATATGGAGGGAGTTGACTTTGGCTCCTTGCATGACTCTGATGTCCAGGATAAACAACATAAGAAACCCCGCCAGGATATGAAACACAGGAAAACTTTTCACAGTCATACCAATCATTTTCTTGGCAGGAACTCTTCCCTGGATTTGTATGAAGACTCTACCGGTGAAGCTTCTGCTTACAATAGCACTAAGAATCATAGGATGGGCACTAAGCATGGTGTTGAGGGAATGAGATCTGATTCTGCTTCTAATCATAGTGATCATTATGAAGAAAACCTTGCAGTTAAGCAGAAAGACTTTCTGCCACATGGCAATGATAACATCAATCAGAAGAATGTGCAAAGGAGTGAACATGTAAAATATAAGCCTTCAAATTCAATCCGTAATCCTCGAGTTTCTGTGGATACTGAAGAAAGAGGACTATCTAATAGAATCACAAAGGAAGAGATGTTTAAGGCAGGTAGGAAGGCAAAAAAACAATACCGCAATGCAGATGGAGCAGGGATGTTTCCAAATGAAATTATGGTGAGTTTAGATATGTAA 1434 0.4073 MEESGELQSEENKVSAEKNKKRKLKTPAQVMALEKFYDEHKYPTEEMKSELSAELGLTEKQISGWFCHRRLKDKRLLKDESAANGRQDRSSGVIQDRGSGLGQDSCGSSKYGDHKYLDPKEVESHGLHNHDFPTADMTYGRMNHYPENVSEMDDTSSESSFLQERFSQGQEPYDTEPSRYLTPSRTLPPLNPKGAINMGYKPSGYLKVKGEIENAAITAVKKQLGRHYREDGPLLGVEFDPLPPGAFEGQIEDQVHEPYCVANPALPNSPEISAVKRRPSVSSRYDSYYTKFSCQDSHMEGVDFGSLHDSDVQDKQHKKPRQDMKHRKTFHSHTNHFLGRNSSLDLYEDSTGEASAYNSTKNHRMGTKHGVEGMRSDSASNHSDHYEENLAVKQKDFLPHGNDNINQKNVQRSEHVKYKPSNSIRNPRVSVDTEERGLSNRITKEEMFKAGRKAKKQYRNADGAGMFPNEIMVSLDM. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00482 477 MobiDBLite consensus disorder prediction 76 116 - -
Seca7g00482 477 MobiDBLite consensus disorder prediction 305 327 - -
Seca7g00482 477 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Seca7g00482 477 MobiDBLite consensus disorder prediction 167 195 - -
Seca7g00482 477 MobiDBLite consensus disorder prediction 305 319 - -
Seca7g00482 477 MobiDBLite consensus disorder prediction 1 26 - -
Seca7g00482 477 MobiDBLite consensus disorder prediction 7 26 - -
Seca7g00482 477 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 474 - -
Seca7g00482 477 MobiDBLite consensus disorder prediction 167 185 - -
Seca7g00482 477 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Seca7g00482 477 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Seca7g00482 477 Gene3D - 8 92 - -
Seca7g00482 477 CDD homeodomain 20 75 IPR001356 GO:0003677
Seca7g00482 477 MobiDBLite consensus disorder prediction 86 106 - -
Seca7g00482 477 SMART HOX_1 18 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00482 Seca-Chr7 5033609 5040516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00482 3 277 Homeobox Transcription Factor Family AT4G03250 53.791 1.86e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca7g00482 Homeodomain 5.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00482 - - gmx:100803515 751.125