Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00481 ATGGAAGGGTTCGGAATGACTTCGGATCTTGGCAGAACTGGTGCTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCTTGCTTGCTCAAGTATGGAAGAAGGGGAAAGCCCAAGTTTTGCCCCTTTCGGCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAACACCTTAAACTGAGCCATGTCTCTAGAATCATATCTGGACAACGCACGCCTATCTTTCAAAGATATCCGCGACCTGAGAAGGAATATCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAGGATAAGGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATTTCACGCAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAGGCTAATAGTCCTCGAACATACACAAGAAGAAGTTCTCCCTTAAATTCTCCATTTGGAAGTAATGAGAGCTTCCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGCCCCCCTAAAAATGGTTTGGATAAAGCATTAGATGTGGTCTTGTATGCTGTTCCTCAAAAGGGTTTCTTCCCACCTGATTCTGCCAGTGCTTCAGTCCACTCTGTATCATCTGGAGGATCAGATAGTATGCATGGCCACATGAGGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGCGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTTTAGGGGATGTTTTTATTTGGGGGGAAGGCACAGGTGATGGTGTACTGGGTGGTGGGAATCATCGAGTTGGGAGTTGTGTGGGTGTAAAAATGGATTCTTTATTTCCCAAAGCGTTGGAATCTGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGACGACATGCAGCCTTAGTAACCAAACAAGGTGAAATTTTCTCTTGGGGGGAGGAATCAGGAGGCAGACTTGGGCACGGTGTTGACTCTGATGTTCTTCATCCAAAGCTTATAGAGGCTCTAAGTAATACAAATATTGAACTTGTAGCATGTGGGGAGTATCATACGTGTGCTGTGACACTTTCTGGTGATCTGTATACATGGGGTAATGGCACGTACAATTATGGTCTTTTGGGTCATGGAAATCAAGTGAGCCACTGGGTTCCAAAGAGAGTAAATGGCCCCTTGGAAGGCATACATGTTTCATATATTTCATGTGGACCATGGCACACTGCTGTTGTAACATCTGCTGGGCAATTATTTACTTTTGGCGATGGTACATTTGGTGCTTTGGGTCATGGTGACCGAAAAAGTATTTCAGTACCAAGGGAAGTAGAGTCCCTTAAGGGTCTTCGTACTATGCGGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTCTTTACATGGGGTGATGGAGACAAAGGTCGCCTTGGGCATGGTGATAAGGAAACAAAACTTGTTCCAACCTGTGTTGCTCTTGTTGAACACAATTTTTGTCAGGTTGCTTGTGGACATAGTCTCACTGTTGCACTTACCACCTCAGGCCATGTCTATACGATGGGAAGTCCTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCAACCCGTGTTGAAGGAAAACTGTCGAAGAGTTTTGTGGAGGAGATATCTTGTGGTGCATATCATGTTGCAGTTTTAACTTTAAGGAATGAAGTTTACACTTGGGGGAAGGGCGCAAATGGCCGTTTAGGCCATGGGGATACAGATGATAAAAACTCCCCAACATTAGTAGAAGCTCTGAAAGACAAACATGTCAAAAGTATTGCTTGTGGTACTAATTTCACTGCAGCTATCTGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCTGGCTGTCGTTTGCCATTTAATTTCAAAAGAAAACGCCATAATTGCTATAATTGTGGACTTGTTTTTTGCCATTCGTGTAGTAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATGGTTGTTTTAATAAACTTAGGAAAACTGTAGAAACTGATTCTTCATCTCATTCTACTGTTAGCAGAAGAGGAAGTATCAATCAGGGGTCTCTTGAGTTAATTGATAAGGATGATAAATTGGATTCCAGATCTCGTAATCAACTTGCCAGGTTTTCTTCAATGGAATCCATGAAACAAGTGGAAAGCAGATCTTCGAAGAAAAACAAGAAATTGGAATTCAACAGTAGTCGTGTCTCACCTGTTCCAAATGGGGGTTCGCAATGGGGAGCACTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAATTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGAAGGCCTAGTCCACCTCGTTCAACGACTCCAACCCCAACACTGGGAGGTCTTACATCCCCGAAGATAGTTGTAGATGATGCTAAGAGGACTAATGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAAGCCCAACTTCAAGAAGTCGAATTGGAAAGAACAACTAAACAGCTAAAAGATGCCATAGCAATTGCTGGGGAAGAAACTGCCAAATGTAAAGCAGCAAAGGAGGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTACCCGTAGGAGCAGCTAGGAATGTCAAATCACCTTCTCTTGCTTCTTTTGGTTCTAATCCTAGTTCCAATGAAGTTAGCTATGCTTCCCTTGATCGGTTAAATATTCAAGCAACCAGCCCAGAAGCAGACTTAACTGGATCAAATAACCAGTTACATTCAAATGGATCAAGCACTGTCAGTAATCGCAGTGCAGGTCACAATAAACAGAACCAGTCAGATTCAAATAATAGAAATGGGAGCAGAACTAAGGATAGTGAATCCCGTAATGAGACCGAATGGGTTGAACAAGATGAACCTGGTGTATATATTACACTCACCTCCCTACCAGGAGGTGTGATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTCAGTGAGAAACAAGCAGAGCAATGGTGGGCTGAGAATCGTGCGAGAGTATATGAACAGTACAATGTACGCATGATTGACAAGTCCACTGTTGGTGTTGGGAGTGAGGACCTGGCTCATTGA 3318 0.4337 MEGFGMTSDLGRTGAVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESFQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKGFFPPDSASASVHSVSSGGSDSMHGHMRTMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHRVGSCVGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSISVPREVESLKGLRTMRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKETKLVPTCVALVEHNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPTRVEGKLSKSFVEEISCGAYHVAVLTLRNEVYTWGKGANGRLGHGDTDDKNSPTLVEALKDKHVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDGCFNKLRKTVETDSSSHSTVSRRGSINQGSLELIDKDDKLDSRSRNQLARFSSMESMKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVKSPSLASFGSNPSSNEVSYASLDRLNIQATSPEADLTGSNNQLHSNGSSTVSNRSAGHNKQNQSDSNNRNGSRTKDSESRNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTVGVGSEDLAH. 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00481 1105 Gene3D - 18 136 IPR011993 -
Seca7g00481 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 379 IPR000408 -
Seca7g00481 1105 SUPERFAMILY FYVE/PHD zinc finger 654 724 IPR011011 -
Seca7g00481 1105 MobiDBLite consensus disorder prediction 981 1019 - -
Seca7g00481 1105 Pfam Unstructured region between BRX_N and BRX domain 956 1025 - -
Seca7g00481 1105 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 421 431 IPR000408 -
Seca7g00481 1105 MobiDBLite consensus disorder prediction 761 801 - -
Seca7g00481 1105 Gene3D - 495 665 IPR009091 -
Seca7g00481 1105 Pfam Transcription factor regulating root and shoot growth via Pin3 1031 1086 IPR013591 -
Seca7g00481 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 327 IPR000408 -
Seca7g00481 1105 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 63 935 - -
Seca7g00481 1105 MobiDBLite consensus disorder prediction 216 230 - -
Seca7g00481 1105 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Seca7g00481 1105 PRINTS Chromosome condensation regulator RCC1 signature 311 324 IPR000408 -
Seca7g00481 1105 PRINTS Chromosome condensation regulator RCC1 signature 421 437 IPR000408 -
Seca7g00481 1105 PRINTS Chromosome condensation regulator RCC1 signature 437 451 IPR000408 -
Seca7g00481 1105 PRINTS Chromosome condensation regulator RCC1 signature 539 557 IPR000408 -
Seca7g00481 1105 PRINTS Chromosome condensation regulator RCC1 signature 597 618 IPR000408 -
Seca7g00481 1105 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Seca7g00481 1105 MobiDBLite consensus disorder prediction 136 190 - -
Seca7g00481 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 435 483 IPR000408 -
Seca7g00481 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 328 376 IPR000408 -
Seca7g00481 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 549 598 IPR000408 -
Seca7g00481 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 379 431 IPR000408 -
Seca7g00481 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 603 650 IPR000408 -
Seca7g00481 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 498 546 IPR000408 -
Seca7g00481 1105 Pfam FYVE zinc finger 654 720 IPR000306 GO:0046872
Seca7g00481 1105 Coils Coil 864 905 - -
Seca7g00481 1105 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 658 720 IPR017455 -
Seca7g00481 1105 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 314 324 IPR000408 -
Seca7g00481 1105 MobiDBLite consensus disorder prediction 981 1036 - -
Seca7g00481 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 602 653 IPR000408 -
Seca7g00481 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 550 601 IPR000408 -
Seca7g00481 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 486 IPR000408 -
Seca7g00481 1105 MobiDBLite consensus disorder prediction 213 232 - -
Seca7g00481 1105 Pfam Transcription factor BRX N-terminal domain 915 948 IPR027988 -
Seca7g00481 1105 MobiDBLite consensus disorder prediction 142 172 - -
Seca7g00481 1105 MobiDBLite consensus disorder prediction 1020 1036 - -
Seca7g00481 1105 FunFam PH, RCC1 and FYVE domains-containing protein 1 237 488 - -
Seca7g00481 1105 MobiDBLite consensus disorder prediction 832 861 - -
Seca7g00481 1105 FunFam PH, RCC1 and FYVE domains-containing protein 1 489 659 - -
Seca7g00481 1105 ProSiteProfiles BRX domain profile. 1032 1087 IPR013591 -
Seca7g00481 1105 MobiDBLite consensus disorder prediction 787 801 - -
Seca7g00481 1105 SUPERFAMILY PH domain-like 19 127 - -
Seca7g00481 1105 Coils Coil 920 940 - -
Seca7g00481 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 434 IPR000408 -
Seca7g00481 1105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 727 IPR013083 -
Seca7g00481 1105 SUPERFAMILY RCC1/BLIP-II 265 655 IPR009091 -
Seca7g00481 1105 Pfam Pleckstrin homology domain 21 127 IPR001849 -
Seca7g00481 1105 SMART fyve_4 652 721 IPR000306 GO:0046872
Seca7g00481 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 549 IPR000408 -
Seca7g00481 1105 Gene3D - 391 494 IPR009091 -
Seca7g00481 1105 Gene3D - 221 390 IPR009091 -
Seca7g00481 1105 CDD FYVE_like_SF 663 716 - -
Seca7g00481 1105 CDD PH_PLC_plant-like 18 128 - -
Seca7g00481 1105 FunFam Putative E3 ubiquitin-protein ligase HERC1 660 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00481 Seca-Chr7 5000561 5010496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00481 924 1096 Major Intrinsic Protein MIP AT1G31880 32.620 1.45e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00481 - - gmx:100802464 2024.59