Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00471 ATGGCTTTCTTTAGGAACTTTTTAAATGATACAGTCTCACATGGTGTCATGGAAGATAAAGGCCAAGGACAGAATGCTAATAGAGTCCATAGGTCAGTAGGTAGTGCTGATGCAAGTTCTAGTGAGAAAGAATTTGATATGAACATGGAGGCACAATATGAGAGTGATGGTGAGCCAGGTGGTGCCTGTAGACAACAAAGCGAGGCAACAGCTGATGATGGAGATGCTATGAAAGAATCCAACTTACAGACTACTGGTAGCAAAACAGCTATGGTAGGAAGGTGGGGTTCAACATTTTGGAAGGACCGCCAACCAGTGTCTCAAAATGGTTCTGAATCTGGGCAGGAATCCAAAAGTGGATCAGACTATAGAAATGCAGAAGGGTCTGAAGACAATTCATTGGATGCAACAGCAGGAAGATTAGACTCAGAAGATGATGATGGACAACAGGAGGCAGGTAAAGGTCCAAGAGGCCATTCTGATGTTCCTGCAGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAGCAGAGTGACTCATTGCATTATAGTGAGATTCGTAAGCCCACTGGATCAAATTCATGGCCTCAACGGATGTCTACTACTGTTAATAGAACTGGGCATAGTAAATCTAGGATTTCAGATGATGCTGAAGATGATGATGGTGATGCTGATTATGAAGAGGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGATTTCGAACCTGCCACAAGTGGTCACGCTGCAAACAAGGATAAAGATTGGGAAGGTGAAGGCTCGGATGAAGATGATGATAGTGACGAAAATATAGATGTCTCTGATGATGATGAATCTTTCTATGTTAAAAAACCTAAGGGAAAGCAACGAGGTAAGGTTGGACAAAGCACAAAATCTACCAGAGATCGTAAAGCATATGCTGCATCTGGTAGACAGAGAAGAGTTAAATCTTCATTTGAAGACAATGAGTCAACAGCAGAGGATTCTGACAGTGATAGTGAGGAGGATTTCAAAAGCATGAAAAAGAGAAGTGTTCATGTCCGCAAGAATAATGGTCGCTCTTCCATAGGCACTAGTTTTTCTATGCGCAACAATGAGGTTCGCACTTCTAGTAGGACAGTTAGGAAGGTATCATATGTTGAAAGTGAAGAAAGTGAAGATGCCGATGAAGGGAAGAAGAAGAAGTCCCAAAAGGAAGAAATTGAAGAGGACGATGGTGACTCCATTGAAAAGGTTCTTTGGCATCAGCCGAAGGGCATGGCTGAAGATGCTCGAAGGAATAATAGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGACTCTGAAGTTGATTGGAATGAGACTGAATTTTTGATAAAATGGAAAGGGCAGTCTCATTTGCACTGTCAGTGGAAGTCTTTCGCTGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAGGACATCAGGTACCGGAAGTCAATCTCAAGAGAGGAGATTGAGGTCAACGATGTGAGTAAGGAGATGGATTTAGATATCATCAAACAGAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATCCTTAAAGATAATTCTGACAATGTCATTCCAGAATACCTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACATCGATATCGCTTTTGCGCAACATGCAATTGATGAGTATAAGGCTCGTGAGGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGAGATTATCAACTTGAGGGATTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAACGTTATTTTAGCTGATGAAATGGGTCTTGGGAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGTATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATCATTGTATATGTTGGTACCCGTGCAAGTCGAGAGGTGTGTCAACAGTATGAATTTTATAATGATAAAAGGCCTGGAAAACCAATAAAATTCAATGCGCTTTTAACCACATATGAAGTAGTTTTGAAAGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTAGATGAGGCTCATAGACTGAAAAATAGTGAGGCACAGTTGTATACAACCCTTTCAGAATTTAGCACCAAGAACAAGTTGCTTGTCACTGGTACTCCTCTACAGAACAGTGTTGAAGAGCTATGGGCTTTGCTTCACTTCCTTGATCCTGACAAGTTCAAGAGTAAGGATGATTTTATTCAAAATTATAAGAATCTGAGTTCTTTCAATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCTCACATACTTAGACGAGTTATCAAGGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAACTTTCATAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCACTTCTAAATATTGTGGTAGAATTGAAGAAGTGTTGCAATCATCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCAGGAAGTGGTGACAACAGTAAACTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTCATCCTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTTGGAGAGTACATGTCACTTCGAGGGTTTCAATTTCAGCGACTTGATGGCAGTACAAAAGCTGAGCTCCGCCAGCAGGCAATGGATCATTTCAATGCTCCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGTGGTCTGGGTATCAACCTTGCCACAGCAGACACTGTCATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGCCAACAAGAAGTTGTTAACATATATAGATTTGTTACAAGCAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAGATGGTTCTGGACCACTTGGTGATTCAAAAACTAAATGCTGAGGGTAAACTGGAGAAGAAAGAAGCAAAAAAAGGAGGAAGTTATTTTGATAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAGGAAAACAAGAAGCGACTCTTAGGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGATGCTGATGGAGAAGAAGGACATGAGTTATTAAGTGCATTTAAGGTTGCCAACTTTTGTAATGATGAAGATGATGGTAGTTTCTGGAGTCGTTGGATAAAGCCTGATGCTGTAGTCCAAGCAGAGGAAGCTCTTGGTCCACGATCTGCAAGAAATATTAAAAGCTATGCGGAGGCTGATCCATCTGAAAGAAATAATAAAAGGAAAAAAAAGGAACCTGAACCACCTGAACGAGTTCAGAAACGCCGTAAAGCAGAGTATTCAGCTCCTGCTGTACCAATGATTGAGGGAGCCTCTGCCCAAGTGAGAACTTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCCGTTTTTCTCGTGCTGTAAGTGCTCATCCCCAATTAAATCACCAGGTTATGAAATATGGGAACGAGAACCAAATTGACTTAATTGTTGCTGAGGTTGGTGGTACAGCTGCGGCAGCTCCACCTGAAGCACAGACTGAGCTTTTCAATACTCTAATTGAGGGCTGTTCCGAAGCGGTGGAACTTGGGAACCTGGATCTTAAGGGGCCTTTGCTGGATTTCTTTGGTGTCCCAGTGAAAGCAAATGATCTACTTACCCGTGTCCAAGAACTTCAACTCCTAGCAAAGCGCATTAGTCGGTATGAAGACCCCATTGCACAATTCCGTGCTTTATCGTATCTCAAACCTTCAAACTGGTCGAAAGGTTGCGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAAATATTAGATTAGATGAGAGGCTTGGCCTTATGAAAAAAATTGCACCTGTAGAACTTCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTTTGGAGCAGGAACTTGCTGTTCTAGGTGTAAAAAATGCCAATAGCAGAGTTGGACGGAAGCCTTCCAAGAAAGAGAGAGAACATATGATGAACGTGTCACAGTTGCGTGGGCAGGAGAAGAAAAAAAAATTGGGTTCTGTTAATGTTCCAATGAGAAAGGGTAGATTTCAGAAACTCCAAAAGGTTGAACCTATTGTAAAAGAGGAGGGTGAAATGTCTGACAATGAAGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGATGAGATGAAAACTTTGAAACGGCTTCACAGGTTGCAGACAACTAGTGCTAATCTTCCGAAGGAAAAGGTTCTTTCAAAAATTCGCAACTATTTACAACTTCTTGGGCGAAGGATAGATCAAATTGTGTTAGAACATGAAGAGGAACCCTTTAAGCAAGATAGAATGACTGTGCGACTGTGGAAATATGTCTCGACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAAGAGCAATATGAGGCTGGGGTTGGCCCCTCTCATGTCAATGGGTCAGTATCTGTTTCATTTAGCCAGAATGGAAACCCAATCCGGCGACATATGGAGAGGCAAAGAGGGTTAAAAAATGTGACTACCTACCAAATGCCAGAACCAGTTAATAATACAGGGAACTCTGAGGCATGGAAACGAAGGAGGAGAGTGGAAAGTGATGATCATTTCCAGGGTCAGTCGCCACCTCAAAGAACTGTAAGTAATGGAATCCGGATTACTGATCCTAACTCACTCGGAATCCTTGGTGCTGGACCATCTGACAAACGCTTTGTTAGTGAGAAACCTTATAGGACACAACCTGGTGGGTTTCCTTCAAAACAAGGCTTCTCATCAGGTATAAAGTAG 5277 0.4137 MAFFRNFLNDTVSHGVMEDKGQGQNANRVHRSVGSADASSSEKEFDMNMEAQYESDGEPGGACRQQSEATADDGDAMKESNLQTTGSKTAMVGRWGSTFWKDRQPVSQNGSESGQESKSGSDYRNAEGSEDNSLDATAGRLDSEDDDGQQEAGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYSEIRKPTGSNSWPQRMSTTVNRTGHSKSRISDDAEDDDGDADYEEEDEADEDDPDDADFEPATSGHAANKDKDWEGEGSDEDDDSDENIDVSDDDESFYVKKPKGKQRGKVGQSTKSTRDRKAYAASGRQRRVKSSFEDNESTAEDSDSDSEEDFKSMKKRSVHVRKNNGRSSIGTSFSMRNNEVRTSSRTVRKVSYVESEESEDADEGKKKKSQKEEIEEDDGDSIEKVLWHQPKGMAEDARRNNRSTEPVLMSHLFDSEVDWNETEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRKSISREEIEVNDVSKEMDLDIIKQNSQVERIIADRILKDNSDNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMSVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQYAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKRPGKPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLVTGTPLQNSVEELWALLHFLDPDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSGDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEENKKRLLGMDIDEILERAEKVEEKDADGEEGHELLSAFKVANFCNDEDDGSFWSRWIKPDAVVQAEEALGPRSARNIKSYAEADPSERNNKRKKKEPEPPERVQKRRKAEYSAPAVPMIEGASAQVRTWSYGNLSKRDALRFSRAVSAHPQLNHQVMKYGNENQIDLIVAEVGGTAAAAPPEAQTELFNTLIEGCSEAVELGNLDLKGPLLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRALSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWENIRLDERLGLMKKIAPVELQHHETFLPRAPNLRDRANALLEQELAVLGVKNANSRVGRKPSKKEREHMMNVSQLRGQEKKKKLGSVNVPMRKGRFQKLQKVEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVDEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPFKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQYEAGVGPSHVNGSVSVSFSQNGNPIRRHMERQRGLKNVTTYQMPEPVNNTGNSEAWKRRRRVESDDHFQGQSPPQRTVSNGIRITDPNSLGILGAGPSDKRFVSEKPYRTQPGGFPSKQGFSSGIK. 1759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00471 1758 MobiDBLite consensus disorder prediction 101 122 - -
Seca7g00471 1758 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 847 1077 - -
Seca7g00471 1758 CDD CD1_tandem 409 489 - -
Seca7g00471 1758 SUPERFAMILY Chromo domain-like 408 491 IPR016197 -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 187 211 - -
Seca7g00471 1758 Gene3D - 847 1077 IPR027417 -
Seca7g00471 1758 SMART chromo_7 527 581 IPR000953 -
Seca7g00471 1758 SMART chromo_7 409 492 IPR000953 -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 1700 1718 - -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 26 42 - -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 299 327 - -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 1207 1235 - -
Seca7g00471 1758 Pfam SNF2-related domain 635 904 IPR000330 GO:0005524|GO:0140658
Seca7g00471 1758 MobiDBLite consensus disorder prediction 1199 1237 - -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 1466 1492 - -
Seca7g00471 1758 Gene3D - 1353 1465 - -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 77 92 - -
Seca7g00471 1758 CDD CD2_tandem 522 578 - -
Seca7g00471 1758 Pfam Chromo (CHRromatin Organisation MOdifier) domain 525 579 IPR023780 -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 1674 1758 - -
Seca7g00471 1758 SUPERFAMILY Chromo domain-like 503 579 IPR016197 -
Seca7g00471 1758 Coils Coil 1076 1096 - -
Seca7g00471 1758 FunFam protein CHROMATIN REMODELING 5 isoform X2 526 578 - -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 354 380 - -
Seca7g00471 1758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 628 800 IPR014001 -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 15 414 - -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 221 244 - -
Seca7g00471 1758 SMART helicmild6 962 1046 IPR001650 -
Seca7g00471 1758 Pfam Domain of unknown function (DUF4208) 1535 1627 IPR025260 -
Seca7g00471 1758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1121 IPR027417 -
Seca7g00471 1758 SMART DUF4208_2 1523 1628 IPR025260 -
Seca7g00471 1758 Pfam Helicase conserved C-terminal domain 933 1046 IPR001650 -
Seca7g00471 1758 ProSiteProfiles Chromo and chromo shadow domain profile. 524 588 IPR000953 -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 262 279 - -
Seca7g00471 1758 FunFam Photoperiod-independent early flowering 1 586 860 - -
Seca7g00471 1758 FunFam Chromo domain-containing protein 1 399 524 - -
Seca7g00471 1758 Gene3D - 607 846 IPR038718 -
Seca7g00471 1758 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 130 1673 - -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 1468 1492 - -
Seca7g00471 1758 Gene3D - 526 578 - -
Seca7g00471 1758 ProSiteProfiles Chromo and chromo shadow domain profile. 411 499 IPR000953 -
Seca7g00471 1758 SMART ultradead3 612 812 IPR014001 -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 137 166 - -
Seca7g00471 1758 CDD SF2_C_SNF 922 1057 - -
Seca7g00471 1758 MobiDBLite consensus disorder prediction 381 414 - -
Seca7g00471 1758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 837 IPR027417 -
Seca7g00471 1758 Gene3D - 397 523 - -
Seca7g00471 1758 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 936 1087 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00471 Seca-Chr7 4914657 4935757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00471 638 1073 RAD5 or RAD16-like Gene Family AT1G02670 25.992 1.14e-34 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca7g00471 SNF2_N 3.8e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00471 K11367 - gmx:100808039 3018.02