Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00469 ATGATCACTACAGTCCTCAGAAGAGCTTGTTCCGCGCTCTCAAGGCGCGGCATCCCTGCCGCCTTCATCGCCTCCACTGACCCCCTCCTCACCTCCACCGCCAGAGGCGAGCTCCGGCGACTCTCAGTCTTCACAGCGAGGCCCTTTCACACGAAACCGGGACCCTTGCATTTCCGCGCCTCCTTGCCTTCTCTCGCAGAGTATGCTGTCGAAGATTTCCCATACGAAGAAGGGTCCAAAGGGAACAACAACGACGAAGGCCTCGAGATCGCGAAGCTTGGGATTTCTCAGGATATTGTCTCTGCGTTGGCCAAAAAAGGCATCACCAAGCTCTTCCCCATTCAGAGGGCTGTGCTGGAACCTGCCATGCAAGGTCGTGATATGATTGGTCGAGCCAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCATTGATAAGATTATTCAGTTTAATGCTAAGCATGGACGAGGAAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACTAGAGAACTTGCGCGGCAGGTTGAAAAGGAGTTCCAAGAGGCGGCACCTAACTTGGACACAATTTGTGTTTATGGGGGTACACCTATTTCTCGACAAATGAGGCAGCTTGATTATGGGGTTGATATTGCAGTGGGCACGCCAGGTCGAATTATTGACCTTCTCAATAGAGGTTCTCTAAATTTGAAGGATGTTCAGTTTGTTGTTCTCGACGAAGCCGATCAGATGCTTCAAGTAGGCTTTCAGGAAGATGTGGAGAAAATCTTGGAGAGGTTACCCCCAAATCGACAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAGCAGATTACACGCAACTACCTAAAAAATCCCCTAACTATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGCTATACTCAATTGCATCGGATATGTACGTTAAACAGGGAATTCTGGCACCTCTAATAACAGAACATGCAAAAGGAGGAAAGTGTATCGTTTTCACTCAAACAAAACGTGATGCTGATCGATTATCATATACCATGGCAAAAAGTCTTAAATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGGGAGAGAACACTTGCTGGCTTCAGAGATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCTAATGTTGATCTTGTAATACATTATGATCTTCCCAATTCTTCAGAGATATTTGTTCATCGATCAGGACGAACAGGTCGTGCTGGTAAAAAAGGATCTGCTATTCTTATTTATAGTGAAGACCAATCCAGGGCTGTTAGGACTATCGAGCGTGATGTAGGCTGTAGATTTAAAGAGCTACCAAGGATTGCTGTCGATAGTGCATCAGTGGACACATTTGGTGGCATGGGTGGTGGGCGATTTGGTTCTTACGGAGGAGGTACAAGGGACCGCCGATATGGTGATACAGGTATTGGCCGTGGTCCTGGATTTGGGCGTTCTGGGGGTTATGGTAACTCTGGATCTGGCCGCTCTAGCTATGGAAATTCTGGTGAAAAGTTTGGTGAACCAAATTATAATCGTTTTGGTGGCTCTGGTTTTAGTCAATCAGGAGGGGGATTTTCTCGTAATTCATCTGGTGAAATGAATAGATTTGGTGGACCAAGCTCTGGTCGTTTTGGCTCCTTTGGTGGTGCCTCTGGTTCAGGTCAATCAGGAAGTAGATCTGGTGGATCATCCAGTGGATTTAGATTTAGTCAACCAGGTGGGGGATTTGGGGGTTCAGATCACTCTGGTGGTTTTGGAGATTTTGGCTCAGGTCGATCTAGTGCATTTGGTGATTCTCGGGACAATGATCAGAACAGAAGAAAATTTTGA 1890 0.4646 MITTVLRRACSALSRRGIPAAFIASTDPLLTSTARGELRRLSVFTARPFHTKPGPLHFRASLPSLAEYAVEDFPYEEGSKGNNNDEGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIIDKIIQFNAKHGRGRDPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGSLNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPNRQTLMFSATMPSWIKQITRNYLKNPLTIDLVGDSDQKLADGISLYSIASDMYVKQGILAPLITEHAKGGKCIVFTQTKRDADRLSYTMAKSLKCEALHGDISQAQRERTLAGFRDGHFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGSAILIYSEDQSRAVRTIERDVGCRFKELPRIAVDSASVDTFGGMGGGRFGSYGGGTRDRRYGDTGIGRGPGFGRSGGYGNSGSGRSSYGNSGEKFGEPNYNRFGGSGFSQSGGGFSRNSSGEMNRFGGPSSGRFGSFGGASGSGQSGSRSGGSSSGFRFSQPGGGFGGSDHSGGFGDFGSGRSSAFGDSRDNDQNRRKF. 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00469 629 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 466 IPR001650 -
Seca7g00469 629 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 88 116 IPR014014 GO:0003724
Seca7g00469 629 CDD DEADc 99 294 - -
Seca7g00469 629 Gene3D - 89 297 IPR027417 -
Seca7g00469 629 MobiDBLite consensus disorder prediction 509 524 - -
Seca7g00469 629 FunFam Nucleolar RNA helicase II 315 471 - -
Seca7g00469 629 FunFam ATP-dependent RNA helicase RhlE 79 296 - -
Seca7g00469 629 MobiDBLite consensus disorder prediction 482 629 - -
Seca7g00469 629 Pfam DEAD/DEAH box helicase 112 281 IPR011545 GO:0003676|GO:0005524
Seca7g00469 629 SMART helicmild6 347 427 IPR001650 -
Seca7g00469 629 MobiDBLite consensus disorder prediction 533 556 - -
Seca7g00469 629 Gene3D - 310 468 IPR027417 -
Seca7g00469 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 448 IPR027417 -
Seca7g00469 629 MobiDBLite consensus disorder prediction 566 590 - -
Seca7g00469 629 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 85 467 - -
Seca7g00469 629 SMART ultradead3 107 310 IPR014001 -
Seca7g00469 629 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 119 293 IPR014001 -
Seca7g00469 629 Pfam Helicase conserved C-terminal domain 323 427 IPR001650 -
Seca7g00469 629 CDD SF2_C_DEAD 319 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00469 Seca-Chr7 4883284 4887772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00469 93 459 Eukaryotic Initiation Factors Gene Family AT3G19760 33.514 3.10e-69 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00469 - - gmx:100786041 829.706