Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00462 ATGATGTTGCTTAGCATGAGGCTTGCTTCTTCTGGATTTAATCCGCCGATTGAAGAAGAAGGGGAGAAAAAATGTTTGAATTCTGAACTTTGGCATGCATGTGCTGGCCCTCTGGTTTCTCTGCCACCTCTTGGAAGTCGTGTAGTGTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAGGGAAGTAGATGCACATATTCCTAATTACCCTAACTTGCCACCACAGCTTATTTGTCAACTTCACAATGTGACAATGCATGCAGATGCTGAAACAGATGAACAAGAGCAAAAGGAGGTCTACCTGCTGCCTGCCGAATTGGGTACTCCTAGCAAACAACCAACCAATTACTTTTGTAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGCAGAGCAGCTGAAAAAGTTTTCCCTCCTCTTGATTACTCACAACAGCCTCCTGCTCAAGAACTAATTGCCAGAGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTGACTACAGGATGGAGTGTCTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCCTGGGCATTCGACGAGCAAATCGTCCACAGACTATCATGCCATCATCGGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACAAATAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGCCCATCCGAATTTGTCATTCCTTTGGCCAAGTATGTCAAAGCTGTGTATCATACACGAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAGACAGAAGAATCAAGTGTCCGTCGATACATGGGTACTATAACAGGTATTAGTGATTTAGATCCAGTCCGCTGGCCAAACTCACATTGGCGTTCTGTAAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTCTGACCACATTCCCAATGTATCCATCTCCATTCCCCTTGAGGTTGAGGCGGCCTTGGCCATCGGGACTACCTTCTCTATATGGTCTCAAGGATGGTGACATGAGCATTGGTTCTCCATTTATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAGTCTTTGAACTTCCAGGGGCTTGGTGTTACGCCATGGATGCAACCAAAGCTTGATGCTTCTATACCAGGTCTCCAACCAGAGTTATACCAAGCAATGACCTCTGCTGCATTCCAGGAAATGAGGACAATGGATCCTTCAAAATCTTCTTCCCAATCTCTGTTGCAGTTTCAGCAGACTTCAAATGTTCCCTCTACTCATACTTCCGAGATACAGAGGCAAATATTACCACAGTCTCAGCTCCAAAACACCCTTCTAAACAATTTTCAAGAAAACCAGGCACCTGCTCAGCCACAGCTTCTGCAACAACAGCAACAGTTGCATCGTTACCACCCATATAGTGATCAGCGGCAACAGCAGCAGCAACAGCAACAAGTTAAAAACTTGCCGCCTGTTCAGCAGCAGTTACCAAATGTCATCTCTCCTTTGTCTAATTTGGCATCAGGTACACATTCTCAATCTCCGCCAATGCAAGCCCTAGCTTCACAATCACACTGCCAGCAGCAGAGCTTTCCTGATCCTATCAGGAATCATATTTCCAGCTCTGATGTTTCCACCATCCAGAGTCTACTAGGTTCGTTTTCTCAGGATGGAACATCTCAGTTACTTAATTTGAATGGATCCAATTCCATTATATCTTCTGCGGCCATACTTCCCAAACAAATAACTGTTGAACCTCAGCTTCCATCTGCTGCTGCTCAGTGTGTATTGCCTCAGGTAGAAAACATCGGAACATCACAATCAAATGTGTCTGAGCTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATACCAAGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGCATGCCGAATCTGAGAAATATAGGCAATGTGAATGATTCATTGTCATTGCCATTTTCTGCTTCAAATTGTGGTGGTGCTACGGGCACTGATTTTCCACTAAGTTCAAACATGACAACTTCAAGTTGTGTGGATGAATCAGGCTTTTTGCAGTCTTCTGAAAATGTAGACCAAGAAAATACACCAACTGGAACCTTTGTCAAGGTTCACAAGTCAGGGTCCTTTGGGAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAACTCGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCCAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAATGATGTTCTTCTTCTCGGCGATGATCCTTGGCAGGAGTTTGTGAACAACGTGTGGTACATCAAAATACTGTCTCCTCAAGAAGTACAACAAATGGGCAAAAGTGTTAGTACTTCTACTTCAGCCTCAGCCTACAAACTTTCTACTGCTGGCAACTCTTGTGAGAATTATGTGAGTCGACAAGAGTTGAGAAGTTCGAGAAATGGCATGGCATCAATGGGATCTTTTCACTACTAG 2694 0.4488 MMLLSMRLASSGFNPPIEEEGEKKCLNSELWHACAGPLVSLPPLGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEQEQKEVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGDMSIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPKLDASIPGLQPELYQAMTSAAFQEMRTMDPSKSSSQSLLQFQQTSNVPSTHTSEIQRQILPQSQLQNTLLNNFQENQAPAQPQLLQQQQQLHRYHPYSDQRQQQQQQQQVKNLPPVQQQLPNVISPLSNLASGTHSQSPPMQALASQSHCQQQSFPDPIRNHISSSDVSTIQSLLGSFSQDGTSQLLNLNGSNSIISSAAILPKQITVEPQLPSAAAQCVLPQVENIGTSQSNVSELAALPPFPGREHSAYQGAADPQSNLLFGINIDPSSLMLQNGMPNLRNIGNVNDSLSLPFSASNCGGATGTDFPLSSNMTTSSCVDESGFLQSSENVDQENTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPQEVQQMGKSVSTSTSASAYKLSTAGNSCENYVSRQELRSSRNGMASMGSFHY. 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00462 897 CDD B3_DNA 121 222 IPR003340 GO:0003677
Seca7g00462 897 SMART B3_2 122 224 IPR003340 GO:0003677
Seca7g00462 897 Gene3D - 286 358 - -
Seca7g00462 897 Pfam Auxin response factor 248 331 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca7g00462 897 Pfam AUX/IAA family 751 848 IPR033389 -
Seca7g00462 897 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 853 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca7g00462 897 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Seca7g00462 897 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Seca7g00462 897 ProSiteProfiles PB1 domain profile. 761 848 IPR000270 GO:0005515
Seca7g00462 897 Gene3D - 120 223 IPR015300 -
Seca7g00462 897 SUPERFAMILY DNA-binding pseudobarrel domain 107 251 IPR015300 -
Seca7g00462 897 MobiDBLite consensus disorder prediction 503 533 - -
Seca7g00462 897 MobiDBLite consensus disorder prediction 447 476 - -
Seca7g00462 897 FunFam Auxin response factor 286 358 - -
Seca7g00462 897 SUPERFAMILY CAD & PB1 domains 753 837 - -
Seca7g00462 897 Gene3D - 757 852 - -
Seca7g00462 897 FunFam Auxin response factor 756 852 - -
Seca7g00462 897 FunFam Auxin response factor 120 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00462 Seca-Chr7 4812577 4821372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00462 6 480 B3 DNA Binding Superfamily AT1G30330 81.263 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca7g00462 AUX_IAA 6.3e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00462 - - gmx:100809105 1592.4