Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca7g00439 | ATGGATAATGCAAACGAAGCATCATCATCCTTGAGTTTTGTATCATCTCACTTGTCAAATGGTTATAGCAATCACAACATATCTTCCTCCACCAGCAATGACCATGGGGCAAATATTGAAATTTTGAGTCTGAATAAGCTCAGTGGAAGCCTTGAGAAGTTATTGATTGATGCTGAGTTTGATTATAGTGATGCTGAGTTTCTTGTGGAAGACACCCCTGTGGGTGTTCATCGCTGTATATTGGCTTCACGTAGTCAGTTTTTTCATAAGCTTTTTAAGAAAGGAAATGATGGATCAGTGAAGGAAGGAAAGCCAAGGTATCTCATGTCAGATTTGGTGCCTTATGGAACAGTTGGATATGAAGCTTTCCTTGTTTTCTTGCATTATTTGTATACTGGAAAGCTTAAGGCTTCACCACCAGAAGTGACAACATGTGTTGATGAAGCTTGTGTCCATGATGCATGCCGCCCTGCTATCAATTATGCTTTGGAGCTGATGTATGCTTCTACCACTTTTCAGATGAAAGAGCTTGTTTTACTTTTTCAGAGGCATCTCCTAAATTTTGTTGAGAAGGCTCTTGTAGAAGATGTCATTCCTATTCTTATGGCTGCCTACCACTGCCAACTAAACCAGCTTCGCTCTCAGTGCATCCAGAGAGTAGCAAGGTCAGACCTTGACAACATATCATTGGAAAGAGAACTCCCTCATGAAGTTGTGACTGAAATCAAATCACTCAGAGTCCAATCTCTGCCAGAATCCACACCTGATGCAATGGAAGTGGAACCAGAACCTTTGAATGATAAGAGTATCAGGAAAATCCTTAAAGCATTGGACTCTGATGATGTTGAGTTACTGAAGCTTCTTTTGAATGAATCCAGTGTCACTCTAAATGATGCCTATGCCTTGCACTATGCATGTGCCTATAGTGATTATAAGGTTGTTCAAGAAGTTCTTAATCTTGGTTTCGCTGATATTCTCCTTAGAAATCCCCGAGGATACACAGTTCTTCATGTGGCTGCAAGACGAAAGGATCCATCCATTTTGGTAGCACTACTGAAGAAAGGGGCTAGTGCATCAGAAACCACTCCAGATGGACAAACTGCTCTTTCAATTTGTCAAAGGTTGACAAGACGCAAGGATTATCGTGAGGAAACAGTGCAAGGGAAGGAATCTAACAAGGACAGGCTCTGTGTTGATGTCCTAGAGAGAGAGATGAGAAGAAATTCTATGTCTGTGAATATGTCTGTTTTGTCACAGTTATCTGCTGATGACTTGCACATGAGACTGGATTACCTTGAAAATAGAGTTGCATTTGCTAGGCTTTTGTTTCCTGCTGAGGCTAGGGTAGCCATGGAGAATGCTGAGGCAGATTCATCAGTGCTGTATACAAGTTCATTAGCTTTGAGGAGCTCAAGTGGCAATCTAAAAGAAGTAGATCTAAATGAAACTCCCTCTGTTCGAACCAGAAAACTCCAGTTAAGATTGCATGCCCTTGTAAAAACAGTTGAGAATGGTAGGCGCTTCTTTCCCCATTGCTCTGAGGTGCTTGACAAGTTTCTAGAAGACGATATGCCTGATGTTTTCTTCCTAGAGAAGGGCTCTGAACAAGAGCAGAGAATCAAGAAAACACGTTTCATGGAACTTAAAGATGAGGTGCAAAAAGCATTTCACAAGGATATGGCTGAAAATAACCATTCAGGTTTCTCATCTTCAGTCTCTTCCACATCATCCTCAACTCATAAGGATGGTCTTAACCGCAGAGCTAGGAAAAAATAA | 1776 | 0.4116 | MDNANEASSSLSFVSSHLSNGYSNHNISSSTSNDHGANIEILSLNKLSGSLEKLLIDAEFDYSDAEFLVEDTPVGVHRCILASRSQFFHKLFKKGNDGSVKEGKPRYLMSDLVPYGTVGYEAFLVFLHYLYTGKLKASPPEVTTCVDEACVHDACRPAINYALELMYASTTFQMKELVLLFQRHLLNFVEKALVEDVIPILMAAYHCQLNQLRSQCIQRVARSDLDNISLERELPHEVVTEIKSLRVQSLPESTPDAMEVEPEPLNDKSIRKILKALDSDDVELLKLLLNESSVTLNDAYALHYACAYSDYKVVQEVLNLGFADILLRNPRGYTVLHVAARRKDPSILVALLKKGASASETTPDGQTALSICQRLTRRKDYREETVQGKESNKDRLCVDVLEREMRRNSMSVNMSVLSQLSADDLHMRLDYLENRVAFARLLFPAEARVAMENAEADSSVLYTSSLALRSSSGNLKEVDLNETPSVRTRKLQLRLHALVKTVENGRRFFPHCSEVLDKFLEDDMPDVFFLEKGSEQEQRIKKTRFMELKDEVQKAFHKDMAENNHSGFSSSVSSTSSSTHKDGLNRRARKK. | 592 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca7g00439 | 591 | Gene3D | - | 265 | 405 | IPR036770 | - | |
| Seca7g00439 | 591 | ProSiteProfiles | BTB domain profile. | 63 | 139 | IPR000210 | GO:0005515 | |
| Seca7g00439 | 591 | Pfam | Ankyrin repeats (3 copies) | 279 | 359 | IPR002110 | GO:0005515 | |
| Seca7g00439 | 591 | MobiDBLite | consensus disorder prediction | 563 | 581 | - | - | |
| Seca7g00439 | 591 | Pfam | NPR1/NIM1 like defence protein C terminal | 373 | 575 | IPR021094 | - | |
| Seca7g00439 | 591 | ProSiteProfiles | Ankyrin repeat region circular profile. | 331 | 359 | - | - | |
| Seca7g00439 | 591 | SMART | BTB_4 | 63 | 189 | IPR000210 | GO:0005515 | |
| Seca7g00439 | 591 | FunFam | Regulatory protein NPR3 | 37 | 221 | - | - | |
| Seca7g00439 | 591 | MobiDBLite | consensus disorder prediction | 558 | 591 | - | - | |
| Seca7g00439 | 591 | PANTHER | REGULATORY PROTEIN NPR3 | 26 | 580 | IPR044292 | GO:0009862|GO:2000022|GO:2000031 | |
| Seca7g00439 | 591 | SUPERFAMILY | POZ domain | 61 | 187 | IPR011333 | - | |
| Seca7g00439 | 591 | CDD | BTB_POZ_NPR_plant | 45 | 189 | - | - | |
| Seca7g00439 | 591 | Pfam | Domain of unknown function (DUF3420) | 224 | 274 | IPR024228 | - | |
| Seca7g00439 | 591 | Pfam | BTB/POZ domain | 61 | 178 | IPR000210 | GO:0005515 | |
| Seca7g00439 | 591 | ProSiteProfiles | Ankyrin repeat profile. | 331 | 363 | IPR002110 | GO:0005515 | |
| Seca7g00439 | 591 | FunFam | BTB/POZ domain and ankyrin repeat-containing protein NPR1 | 233 | 395 | - | - | |
| Seca7g00439 | 591 | Gene3D | Potassium Channel Kv1.1; Chain A | 32 | 221 | IPR011333 | - | |
| Seca7g00439 | 591 | SUPERFAMILY | Ankyrin repeat | 274 | 374 | IPR036770 | - | |
| Seca7g00439 | 591 | SMART | ANK_2a | 297 | 327 | IPR002110 | GO:0005515 | |
| Seca7g00439 | 591 | SMART | ANK_2a | 331 | 360 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca7g00439 | Seca-Chr7 | 4596545 | 4600259 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | TRAF | Seca7g00439 | NPR1_like_C | 5.1e-85 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca7g00439 | K14508 | - | gmx:100816582 | 955.666 |