Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00439 ATGGATAATGCAAACGAAGCATCATCATCCTTGAGTTTTGTATCATCTCACTTGTCAAATGGTTATAGCAATCACAACATATCTTCCTCCACCAGCAATGACCATGGGGCAAATATTGAAATTTTGAGTCTGAATAAGCTCAGTGGAAGCCTTGAGAAGTTATTGATTGATGCTGAGTTTGATTATAGTGATGCTGAGTTTCTTGTGGAAGACACCCCTGTGGGTGTTCATCGCTGTATATTGGCTTCACGTAGTCAGTTTTTTCATAAGCTTTTTAAGAAAGGAAATGATGGATCAGTGAAGGAAGGAAAGCCAAGGTATCTCATGTCAGATTTGGTGCCTTATGGAACAGTTGGATATGAAGCTTTCCTTGTTTTCTTGCATTATTTGTATACTGGAAAGCTTAAGGCTTCACCACCAGAAGTGACAACATGTGTTGATGAAGCTTGTGTCCATGATGCATGCCGCCCTGCTATCAATTATGCTTTGGAGCTGATGTATGCTTCTACCACTTTTCAGATGAAAGAGCTTGTTTTACTTTTTCAGAGGCATCTCCTAAATTTTGTTGAGAAGGCTCTTGTAGAAGATGTCATTCCTATTCTTATGGCTGCCTACCACTGCCAACTAAACCAGCTTCGCTCTCAGTGCATCCAGAGAGTAGCAAGGTCAGACCTTGACAACATATCATTGGAAAGAGAACTCCCTCATGAAGTTGTGACTGAAATCAAATCACTCAGAGTCCAATCTCTGCCAGAATCCACACCTGATGCAATGGAAGTGGAACCAGAACCTTTGAATGATAAGAGTATCAGGAAAATCCTTAAAGCATTGGACTCTGATGATGTTGAGTTACTGAAGCTTCTTTTGAATGAATCCAGTGTCACTCTAAATGATGCCTATGCCTTGCACTATGCATGTGCCTATAGTGATTATAAGGTTGTTCAAGAAGTTCTTAATCTTGGTTTCGCTGATATTCTCCTTAGAAATCCCCGAGGATACACAGTTCTTCATGTGGCTGCAAGACGAAAGGATCCATCCATTTTGGTAGCACTACTGAAGAAAGGGGCTAGTGCATCAGAAACCACTCCAGATGGACAAACTGCTCTTTCAATTTGTCAAAGGTTGACAAGACGCAAGGATTATCGTGAGGAAACAGTGCAAGGGAAGGAATCTAACAAGGACAGGCTCTGTGTTGATGTCCTAGAGAGAGAGATGAGAAGAAATTCTATGTCTGTGAATATGTCTGTTTTGTCACAGTTATCTGCTGATGACTTGCACATGAGACTGGATTACCTTGAAAATAGAGTTGCATTTGCTAGGCTTTTGTTTCCTGCTGAGGCTAGGGTAGCCATGGAGAATGCTGAGGCAGATTCATCAGTGCTGTATACAAGTTCATTAGCTTTGAGGAGCTCAAGTGGCAATCTAAAAGAAGTAGATCTAAATGAAACTCCCTCTGTTCGAACCAGAAAACTCCAGTTAAGATTGCATGCCCTTGTAAAAACAGTTGAGAATGGTAGGCGCTTCTTTCCCCATTGCTCTGAGGTGCTTGACAAGTTTCTAGAAGACGATATGCCTGATGTTTTCTTCCTAGAGAAGGGCTCTGAACAAGAGCAGAGAATCAAGAAAACACGTTTCATGGAACTTAAAGATGAGGTGCAAAAAGCATTTCACAAGGATATGGCTGAAAATAACCATTCAGGTTTCTCATCTTCAGTCTCTTCCACATCATCCTCAACTCATAAGGATGGTCTTAACCGCAGAGCTAGGAAAAAATAA 1776 0.4116 MDNANEASSSLSFVSSHLSNGYSNHNISSSTSNDHGANIEILSLNKLSGSLEKLLIDAEFDYSDAEFLVEDTPVGVHRCILASRSQFFHKLFKKGNDGSVKEGKPRYLMSDLVPYGTVGYEAFLVFLHYLYTGKLKASPPEVTTCVDEACVHDACRPAINYALELMYASTTFQMKELVLLFQRHLLNFVEKALVEDVIPILMAAYHCQLNQLRSQCIQRVARSDLDNISLERELPHEVVTEIKSLRVQSLPESTPDAMEVEPEPLNDKSIRKILKALDSDDVELLKLLLNESSVTLNDAYALHYACAYSDYKVVQEVLNLGFADILLRNPRGYTVLHVAARRKDPSILVALLKKGASASETTPDGQTALSICQRLTRRKDYREETVQGKESNKDRLCVDVLEREMRRNSMSVNMSVLSQLSADDLHMRLDYLENRVAFARLLFPAEARVAMENAEADSSVLYTSSLALRSSSGNLKEVDLNETPSVRTRKLQLRLHALVKTVENGRRFFPHCSEVLDKFLEDDMPDVFFLEKGSEQEQRIKKTRFMELKDEVQKAFHKDMAENNHSGFSSSVSSTSSSTHKDGLNRRARKK. 592
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00439 591 Gene3D - 265 405 IPR036770 -
Seca7g00439 591 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Seca7g00439 591 Pfam Ankyrin repeats (3 copies) 279 359 IPR002110 GO:0005515
Seca7g00439 591 MobiDBLite consensus disorder prediction 563 581 - -
Seca7g00439 591 Pfam NPR1/NIM1 like defence protein C terminal 373 575 IPR021094 -
Seca7g00439 591 ProSiteProfiles Ankyrin repeat region circular profile. 331 359 - -
Seca7g00439 591 SMART BTB_4 63 189 IPR000210 GO:0005515
Seca7g00439 591 FunFam Regulatory protein NPR3 37 221 - -
Seca7g00439 591 MobiDBLite consensus disorder prediction 558 591 - -
Seca7g00439 591 PANTHER REGULATORY PROTEIN NPR3 26 580 IPR044292 GO:0009862|GO:2000022|GO:2000031
Seca7g00439 591 SUPERFAMILY POZ domain 61 187 IPR011333 -
Seca7g00439 591 CDD BTB_POZ_NPR_plant 45 189 - -
Seca7g00439 591 Pfam Domain of unknown function (DUF3420) 224 274 IPR024228 -
Seca7g00439 591 Pfam BTB/POZ domain 61 178 IPR000210 GO:0005515
Seca7g00439 591 ProSiteProfiles Ankyrin repeat profile. 331 363 IPR002110 GO:0005515
Seca7g00439 591 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 233 395 - -
Seca7g00439 591 Gene3D Potassium Channel Kv1.1; Chain A 32 221 IPR011333 -
Seca7g00439 591 SUPERFAMILY Ankyrin repeat 274 374 IPR036770 -
Seca7g00439 591 SMART ANK_2a 297 327 IPR002110 GO:0005515
Seca7g00439 591 SMART ANK_2a 331 360 IPR002110 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca7g00439 Seca-Chr7 4596545 4600259 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca7g00439 NPR1_like_C 5.1e-85 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00439 K14508 - gmx:100816582 955.666