Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00428 ATGGATGTGACCAAGCTACATAACTCTGATCATGACAAGAAAGATGATGATGAAGTTGTGCTTCCTGGGTTTAGATTCCATCCAACAGATGAAGAGCTTGTTGGGTTTTATCTGAAAAGAAAAGTGGACAATAAGCCTCTTAGAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCATGGGATCTTCCAAAAGAAGTGAGTTCTGTGGGGGAGAAGGAATGGTATTTCTTTTGCATAAGAGGAAGAAAATACAGGAACAGCATAAGGCCTAACAGAGTGACAGGGTCTGGATTCTGGAAAGCAACAGGGATTGACAAGCCTATATACTGTGTTAAGGAACCCCATGAATGCATTGGCCTTAAGAAATCTTTGGTATATTACCGTGGAAGTGCAGGGAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTACCACCCAATGGAAAATCTAACAATAATCCACAACCTAATGAAGTCAACCTTATTAATGTGCCTTTGCAGGAAGTGTGGACCCTATGCCGAATATTGAAACGAATCCCATCATACAAGAAATACGCACCAAATTTGAAAGACTCATCATCAATAGTGATGACCAACAAGCCAAACCCCACTACTACTACTACTACTAATTCTAAAACCTGCAGCTTAGAATCTGACAACAGCAAGCCATACTTGACTTTCAGTACAAATAACTCACCACTACTCATTCAACAAAATGAAAGGAAACCTGCAGTTATTGGACACAATAACCACTTATTTGTACCTCACCAGCCCCCAACAACGCTGTCTAATTACTCTTCAAGCTTTTGGAATCAGAATGTGGTGGATGATGATCATAATGCTTTTGCAAGTGAGAATTGGGATGATCTCAGATCCGTGGTTCAGTTTGCCATTGATCCATCAAAGGTTTATGATTATAAAGAATTTAATATATAG 951 0.3933 MDVTKLHNSDHDKKDDDEVVLPGFRFHPTDEELVGFYLKRKVDNKPLRIELIKQIDIYKYDPWDLPKEVSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKSNNNPQPNEVNLINVPLQEVWTLCRILKRIPSYKKYAPNLKDSSSIVMTNKPNPTTTTTTNSKTCSLESDNSKPYLTFSTNNSPLLIQQNERKPAVIGHNNHLFVPHQPPTTLSNYSSSFWNQNVVDDDHNAFASENWDDLRSVVQFAIDPSKVYDYKEFNI. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00428 316 ProSiteProfiles NAC domain profile. 20 183 IPR003441 GO:0003677|GO:0006355
Seca7g00428 316 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 261 - -
Seca7g00428 316 SUPERFAMILY NAC domain 19 182 IPR036093 GO:0003677|GO:0006355
Seca7g00428 316 Pfam No apical meristem (NAM) protein 22 149 IPR003441 GO:0003677|GO:0006355
Seca7g00428 316 Gene3D NAC domain 29 186 IPR036093 GO:0003677|GO:0006355
Seca7g00428 316 MobiDBLite consensus disorder prediction 201 222 - -
Seca7g00428 316 FunFam NAC domain-containing protein 35 29 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00428 Seca-Chr7 4476357 4478728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00428 17 183 NAC Transcription Factor Family AT5G39820 62.712 8.89e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca7g00428 NAM 1.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00428 - - gmx:100784323 468.774