Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00404 ATGGTTGTTGAGGCTCTAGTTCCTCTACTTGAGTGCGATATGCAATCTGTGAATGAAGATTATTCAGCTTCGTTTGGTCACGAAATGAAGAAGCAGGGGAATCAGAAAATCCATTGTTCCAGAGATAATTTGCAAGCTGGGGAACTTTGGACTGATGGACTTATTTGTGCTTTTGAGTTCATTCGTGGTTCTAGGAAGATGCACTCAGCAGATGCAGTTAGAGAGGTGGCCAAGAAGAAGGGATTTCAAGGCAATCTAAGTAATAATTCTAATTCCTTTGAAAAAAGAGACCCTAGTGGAAATAGCTTTCATGAATCATCATTGCCAGCTGATCCTGGAGTTGGGGAACTTCATGATTTTGATGACCATCATCACTGTTGTGGCCAGGAGTACCAGTCATCAGAATTGTGTGGCAAAGAGGGTCTTCCAAGGAGTTATTGGAGACCAATTGGTTGGGCTAGAATTTCTGAACTTGTTCAGGCAGTGCATAGTGATGCTGGCTGGGACTCACAGCTCACAGATGATGAAAGTGATGTTCCTGTTGCAGATGTAGCCACTCCTTACTGGGAAAAGCCAGTGGGTCCAACTTGGTGGTTTCATTTGGATGCTGCTAATCCATTTATTACTACATGGCTTGGTAGTTCTCATTGGTTACATCCTGCTATAAGCATTGCTTTGCAAGATGAAAGCAGATTAATAAGTGATCGAATGAAACACCTTCTATATGAGGTTCCTGTTCGAGTTGCTGGTGGATTACTATTTGAACTTCTAGGGCAATCTGCTGCTGATCCATTTGCTGAGGAAGATGACATTCCCATTGTATTACGAGCATGGCAAGCACAAAACTTTTTGGTGACAGCTTTACATGTTAAGGGCTCTGGATCAAAAATCAATGTGCTGGGTATTTTAGAAGTTCAGGAACTGCTGGCTGGTGGAGGCGCTAACATTCCACGCAGCATTCATGAGGTTGTAGCACACCTAGCTTGCCGTCTTGCACGATGGGATGATAGGTTGTTTCGGAAATACGTCTTTGGCGCTGCAGATGAAGTTGAATTGATGTTTATGAACAGGAGGAACCATGAGGATTTGCATCTGTTCACTATAATATTGAACCAGGAAATTAGAAGATTATCAACCCAGGTTATAAGAGTGAAATGGTCTCTCCATGCACGAGAGGAAATTGTTTTTGAACTTCTTCAACAGTTGAGAGGAAATGTAACAAGAGCATTGCTGCAAGGCATATTGAAGAGTACAAGGCAAATGATAGAGGAGCAAGAAGCAGTTCGAGGTCGCTTGTTCACAATCCAAGATGTAATGCAAAGCGCAGTTCGTGCATGGTTGCAGTTGAATGAAGCTGTAATAATAATAGCTTACTACCATTATCTCCAACTGACTTCAGAATGCACCATGCAGGAGCCCCTTCTGAGCCTTTTCTCCAGGAAAGGAGAATCACATTCACTATCACCCAAGGAACAATCTGCCCATGATCTTGCTCTTGCCCCATCACTGCCTCAATCAAGTTCTCCTCATATCATCAATGAAGCCAAGACCAAGAGCCCTCCTTATATTAACCTCATAGCCAACTTGAGCTTCAGGAAAGGGAAGATTACTCATCGCTCCCGTTCTGCTCCATCCATATTATTCACTGACACAAGGGTAGATTTTCATGAGCCCTCTGAATCCAAACCTGCAAACAAGTCATCAACTTTAATAGTTAGGATATCTTTCATTGGTGTTTTCTTGTATGTGGCAACTGGGGTTGTAGTGTACTTGACAAGTGGGAGTTTCAAGGGCACTACCTCATTCAGGCCTGTAGATGCTGTTTACTTTACAGTGGTAACTCTCTGCACTATTGGATATGGTGATATTGTTCCTGACTCCATATTTACCAAGATGTTTACATGTGGTTTCATTTTGGTGGGTTTTGGATTTGTTGGTTTTCTGCTTAATGGGTTGGTTGCATACATTTGTGATACACATGAGGCATTCTTATTAAGCATGATGGATGAGAATCGATATAAGAAAATTCTCAGGACATATATGGTTGATGTTGAGAAAGGAAGAATGAGGATAAGAACTAAAGTTTGTCTATCTTTGGCTATTGTCATTGGCTGCATTGTTATAGGAACAGTTGCTGCACGCTTTCTAGAGGATCTAAATTGGGCTGACAGCTTTTATCTCTCCATTACTTCTGTTACAACAGTTGGTTATGGGGATTATGCTTTCAGAACTGTAACTGGAAGATGTTTTGCAAGTCTATGGCTTTTGGTAAGCACACTGGCAGTTGCCAGGGCCTTTCTCTACCTCACTGATTATAGCATTAACAAGAGAAGTCGTGAGATGGCAAAGTGGGTTCTTCAGAAGAAGATAACCTTATCAGATTTAGCAGCTGCAGACCTTGATAATGATGGATCAATCAGTAAGTCTGAATTTGTGATATACAAGCTTAAGCAAATGGGGAAGATTACTGAGATAGACATTCTGCAAATAAGCAAACAATTTGATTCATTGGACCATGGCATGTATGGCAAGATTACTCTAGCTGATCTCATGGAAAAGGTCTAA 2565 0.4156 MVVEALVPLLECDMQSVNEDYSASFGHEMKKQGNQKIHCSRDNLQAGELWTDGLICAFEFIRGSRKMHSADAVREVAKKKGFQGNLSNNSNSFEKRDPSGNSFHESSLPADPGVGELHDFDDHHHCCGQEYQSSELCGKEGLPRSYWRPIGWARISELVQAVHSDAGWDSQLTDDESDVPVADVATPYWEKPVGPTWWFHLDAANPFITTWLGSSHWLHPAISIALQDESRLISDRMKHLLYEVPVRVAGGLLFELLGQSAADPFAEEDDIPIVLRAWQAQNFLVTALHVKGSGSKINVLGILEVQELLAGGGANIPRSIHEVVAHLACRLARWDDRLFRKYVFGAADEVELMFMNRRNHEDLHLFTIILNQEIRRLSTQVIRVKWSLHAREEIVFELLQQLRGNVTRALLQGILKSTRQMIEEQEAVRGRLFTIQDVMQSAVRAWLQLNEAVIIIAYYHYLQLTSECTMQEPLLSLFSRKGESHSLSPKEQSAHDLALAPSLPQSSSPHIINEAKTKSPPYINLIANLSFRKGKITHRSRSAPSILFTDTRVDFHEPSESKPANKSSTLIVRISFIGVFLYVATGVVVYLTSGSFKGTTSFRPVDAVYFTVVTLCTIGYGDIVPDSIFTKMFTCGFILVGFGFVGFLLNGLVAYICDTHEAFLLSMMDENRYKKILRTYMVDVEKGRMRIRTKVCLSLAIVIGCIVIGTVAARFLEDLNWADSFYLSITSVTTVGYGDYAFRTVTGRCFASLWLLVSTLAVARAFLYLTDYSINKRSREMAKWVLQKKITLSDLAAADLDNDGSISKSEFVIYKLKQMGKITEIDILQISKQFDSLDHGMYGKITLADLMEKV. 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00404 854 PANTHER MAGNESIUM TRANSPORTER CORA-LIKE FAMILY PROTEIN 18 448 - -
Seca7g00404 854 ProSitePatterns EF-hand calcium-binding domain. 799 811 IPR018247 -
Seca7g00404 854 Gene3D - 661 797 - -
Seca7g00404 854 FunFam Two-pore potassium channel 2-like 673 797 - -
Seca7g00404 854 PRINTS Two pore domain K+ channel signature 613 641 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca7g00404 854 PRINTS Two pore domain K+ channel signature 733 742 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca7g00404 854 Pfam Ion channel 579 655 IPR013099 -
Seca7g00404 854 Pfam Ion channel 702 771 IPR013099 -
Seca7g00404 854 Gene3D - 559 659 - -
Seca7g00404 854 SUPERFAMILY Voltage-gated potassium channels 668 789 - -
Seca7g00404 854 MobiDBLite consensus disorder prediction 83 106 - -
Seca7g00404 854 SUPERFAMILY Voltage-gated potassium channels 569 656 - -
Seca7g00404 854 SUPERFAMILY EF-hand 795 851 IPR011992 -
Seca7g00404 854 MobiDBLite consensus disorder prediction 83 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00404 Seca-Chr7 4181997 4190358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00404 533 852 Ion Channels AT4G18160 49.844 4.73e-104 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00404 - - aip:107608896 640.958