Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00397 ATGATTCCGCAACAAGAACTCGACTTCAATCCCAATTATCTCAAACTATATTACGGAAAGCTGTTTCCTTTTGCTGATATTTTTAGATGGGTGTCTTATGGCAACGATGGGAAGCACCCTGGTTGTGATCAATCCTACTTTGGCCGGAGAGAGTTTGCTTTCACTCTGGACAATGACATATTTCTGCGCTTCCAATCTTTCAACAATGCTCTTGAGCTCGAAAACTCCACCAAAGAAAAGTGCCCTTTCAAGATAGACATTGGACCTGTCTACACTGTTGATCCTGCAAAAAGGCACGCCTATGCACAGGGTGATAATAATATCTTCACTCCAGTTGAGAGGGAGTTAATTTTTGATATAGATATGACAGATTATGATGATGTTAGATACTGCTGCTCAGGTGCTGACGTGTGCTTGGATTGCTGGCCATTGATGACTATAGCTATCAAAGTGATCAATACTGCCTTAAGAGATGACTTTGGTTTCAAACACATTCTCTGGGTCTTTAGTGGACGCAGAGGTGTTCATTGTTGGGTCTGTGATGGGAAGGCGAGAAGGTTGACTAATGAGCAGAGAGCTGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCTTTGACGGGTTCTGCCCTTCATCCTTTCTTGGCGACATCGTACACTAACGTTCTCAAGGACTATTTTGAGAAAAAACTGCTTACAAGTCAAAACTTACTTGCTACTGAGGAGAGATATGAGAAGATCCTAAACATGATTCCTGATGAATGTACATTTACTTTTGCAGCTATTGCTTCTGAACTTAGGGGAAAATGGCAAGATAGTAGGCGGGCCTCTAGCACAAAAGACATTAATGTTGTGCGATGGGAACAATGCAAACAGTTGCTGCAATCTGGAAAACATAAGGCACAAGGGCTGCGTAGATGTGTTGAAGAGATTGTGTTTTTCTTTACTTACCCCAGACTAGATATGGAGGTTTCAAAACATATGAATCATTTGCTTAAAGCACCGTTTTGTGTACATCCAAAAACTGGCCGTGTCTGTGTCCCTATTGATCCAACTCGGTGTGAGGAGTTTGATCCTACTACAGTACCCACCCTTTCCCAGCTTTTAGAAGAGCTTAATAATGAAGGCTCAAGAGTTGATGTTGATGGTGGTATGTTAATTTTGTACTCAGATAATCTGTTTCCTTTCTATAAAAACCTCTTATTGCCATCTCCACATGACTTTTAA 1251 0.4101 MIPQQELDFNPNYLKLYYGKLFPFADIFRWVSYGNDGKHPGCDQSYFGRREFAFTLDNDIFLRFQSFNNALELENSTKEKCPFKIDIGPVYTVDPAKRHAYAQGDNNIFTPVERELIFDIDMTDYDDVRYCCSGADVCLDCWPLMTIAIKVINTALRDDFGFKHILWVFSGRRGVHCWVCDGKARRLTNEQRAAIADYFRVYKGNENSHKKVSLTGSALHPFLATSYTNVLKDYFEKKLLTSQNLLATEERYEKILNMIPDECTFTFAAIASELRGKWQDSRRASSTKDINVVRWEQCKQLLQSGKHKAQGLRRCVEEIVFFFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPTRCEEFDPTTVPTLSQLLEELNNEGSRVDVDGGMLILYSDNLFPFYKNLLLPSPHDF. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00397 416 SUPERFAMILY Prim-pol domain 10 382 - -
Seca7g00397 416 CDD AE_Prim_S 23 367 IPR014052 GO:0003896|GO:0006269
Seca7g00397 416 FunFam DNA primase 1 401 - -
Seca7g00397 416 Pfam DNA primase small subunit 118 358 IPR002755 GO:0003896|GO:0006269
Seca7g00397 416 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 15 378 IPR014052 GO:0003896|GO:0006269
Seca7g00397 416 PANTHER DNA PRIMASE SMALL SUBUNIT 7 386 - -
Seca7g00397 416 Gene3D DNA primase, PRIM domain 2 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00397 Seca-Chr7 4124568 4130081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00397 3 387 Core DNA Replication Machinery Family AT5G41880 67.617 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00397 K02684 - gmx:100780574 719.539