Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00396 ATGGATTTCTTCTCCGAATATGGCGATGCCAGCAGGTACAAAATTCAAGAAGTCATTGGGAAAGGAAGTTATGGTGTGGTTTGTTCAGCCATTGACACTCACACTGGCGAAAAGGTTGCAATAAAAAGGATTCACAATATCTTTGAGCATATATCTGATACTGCACGTATTCTCCGTGAGATAAAGTTGCTTAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCACGTCATGCTTCCTCCTTCTAGGAGGGACTTCAAAGATATTTTTGTTGTTTTTGAGCTCATGGAGTCTGATCTGCATCAAGTCATTAAAGCCAATGATGACTTAACAAAAGAGCACTATCAGTTTTTCCTATACCAGTTACTTCGAGCATTGAAGTATATTCACACCGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATACTGGCCAATGCAAACTGTAAACTTAAAATTTGTGATTTTGGCTTAGCTAGAGTTGCTTTCAATGACACACCATCAACTGTATTTTGGACGGATTATGTAGCTACAAGGTGGTATAGGGCACCAGAGCTCTGTGGATCATTTTACTCAAAGTATACTCCAGCAATTGATATGTGGAGTATAGGTTGCATCTTTGCTGAAGTATTAATAGGAAAACCGCTTTTTCCTGGAAAAAATGTTGTCCATCAGTTGGATCTGATTACAGATCTGCTTGGAACTCCCCCACTGGATACGATATCCCAGGTACGCAATGATAAGGCAAGGAGATACCTAACTAATATGAGGAAAAAGCAGCCTGTACCATTTGCACAAAGATTTCCTAAAGCAGATCCTTTATCACTACGACTATTGGAAAGGTTGCTCGCCTTTGATCCAAAAGATCGGCCTACTGCTGAAGAGGCATTAGCTGATCCTTATTTCAAGGGACTTGCAAAAATCGAGAGGGAACCATCCTGCCAGCCTATTACAAAACTGGAGTTTGAATTTGAAAGGCGGAGAGTCACAAAGGAAGAAATTCGAGAGTTAATTTTCCGTGAGATTCTAGAGTATCATCCTCAACTATTGAAAGACTGCACAAATGGAACAGAAACAACTAATTTTCTTTATCCAAGTGCCGTTGATCAATTAAAAAATCAGTTTGCTCATCTTGAGGAAACTGGTGGTAAAAGTGATCCAGTTATGCCACTTGAAAGAAAGCATGCATCACTTCCCAGATCAACAATTGTACATTCAAACATGGTATCCCCAAAAGAGCAATCAAACATTGCTTCCTGCAAAAACCGGCAAACAGCTGAGGAATGTAATAATAATTCCAGAGATACAGAAAATCCTGCAACAAGGTCTATTCAGAGATTGCAAAGAATTCCACTAGGCATGTGA 1371 0.3946 MDFFSEYGDASRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKRIHNIFEHISDTARILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPSTVFWTDYVATRWYRAPELCGSFYSKYTPAIDMWSIGCIFAEVLIGKPLFPGKNVVHQLDLITDLLGTPPLDTISQVRNDKARRYLTNMRKKQPVPFAQRFPKADPLSLRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPITKLEFEFERRRVTKEEIRELIFREILEYHPQLLKDCTNGTETTNFLYPSAVDQLKNQFAHLEETGGKSDPVMPLERKHASLPRSTIVHSNMVSPKEQSNIASCKNRQTAEECNNNSRDTENPATRSIQRLQRIPLGM. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00396 456 Gene3D Phosphorylase Kinase; domain 1 28 350 - -
Seca7g00396 456 ProSiteProfiles Protein kinase domain profile. 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00396 456 Pfam Protein kinase domain 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00396 456 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Seca7g00396 456 Gene3D Transferase(Phosphotransferase) domain 1 99 327 - -
Seca7g00396 456 ProSitePatterns MAP kinase signature. 48 151 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca7g00396 456 MobiDBLite consensus disorder prediction 416 442 - -
Seca7g00396 456 FunFam Mitogen-activated protein kinase 3 107 - -
Seca7g00396 456 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 354 - -
Seca7g00396 456 SUPERFAMILY Protein kinase-like (PK-like) 10 308 IPR011009 -
Seca7g00396 456 SMART serkin_6 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g00396 456 FunFam Mitogen-activated protein kinase 99 327 - -
Seca7g00396 456 CDD STKc_TDY_MAPK 12 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00396 Seca-Chr7 4112548 4116704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00396 1 433 MAP Kinase Gene Family AT2G42880 84.065 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca7g00396 Pkinase 5.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00396 - - aprc:113848523 826.624